AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head: Alternative polyadenylation coverage ratios
Derive polyadenylation-centric coverage ratios and compare with observed ratios for the distal/proximal sites.
Evaluation procedure
Derive polyadenylation-centric coverage ratios and compare with observed ratios for the distal/proximal sites.
- Model
- AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head
- Benchmark
- Alternative polyadenylation coverage ratios (AlphaGenome paper)
- Dataset
- Alternative polyadenylation coverage ratios: evaluated data subset
- origin
- Author-reported evaluation
- configuration
- AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head
- protocol id
- alphagenome-2026-t3-protocol-12
- dataset version
- Not reported
- split
- Held-out test sites; the task paragraph does not identify the exact fold/site manifest.
- population
- PolyADB-annotated sites near gene boundaries; observed coverage ratios from tissue-pooled GTEx RNA-seq.
- inputs
- Not reported
- adaptation
- AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head
- metric implementation
- Not reported
- aggregation
- Spearman correlation of predicted versus observed coverage ratios.
- budget
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-a757f4af4277 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
63 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.adaptation AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head Context-only references | AlphaGenome Nature 2026 supplementary methods No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| attributes.comparison.adaptation AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head Context-only references | AlphaGenome Nature 2026 supplementary comparison tables No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| attributes.comparison.aggregation Spearman correlation of predicted versus observed coverage ratios. Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.aggregation Spearman correlation of predicted versus observed coverage ratios. Context-only references | AlphaGenome Nature 2026 supplementary methods No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| attributes.comparison.aggregation Spearman correlation of predicted versus observed coverage ratios. Context-only references | AlphaGenome Nature 2026 supplementary comparison tables No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| attributes.comparison.budget No value recorded Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.budget No value recorded Context-only references | AlphaGenome Nature 2026 supplementary methods No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| attributes.comparison.budget No value recorded Context-only references | AlphaGenome Nature 2026 supplementary comparison tables No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| attributes.comparison.dataset_version No value recorded Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
Release 2026-09-17-a757f4af4277 · Record review: needs review
- AlphaGenome Nature 2026 supplementary comparison tables · Original source · Nature version of record, 28 January 2026
- AlphaGenome Nature 2026 supplementary methods · Original source · Supplement to Nature version of record, 28 January 2026; content hash pinned
- alphagenome: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: alphagenome-2026-evaluation-ee77e36eee474240
- areas
- dna-genomes
- origin
- author_reported
- protocol
- Derive polyadenylation-centric coverage ratios and compare with observed ratios for the distal/proximal sites.
- version
- AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head
- source evaluation index
- 12
- source table
- 3
- comparison
- protocol id: alphagenome-2026-t3-protocol-12; dataset version: Not reported; split: Held-out test sites; the task paragraph does not identify the exact fold/site manifest.; population: PolyADB-annotated sites near gene boundaries; observed coverage ratios from tissue-pooled GTEx RNA-seq.; inputs: Not reported; adaptation: AlphaGenome Borzoi-fold-1 model fine-tuned with base-resolution Borzoi RNA-seq head; metric implementation: Not reported; aggregation: Spearman correlation of predicted versus observed coverage ratios.; budget: Not reported
- context
- allowed inputs: RNA-seq predictions and PolyADB site annotations; compare Borzoi coverage-ratio predictions.; limitations: QUARANTINED NUMERICAL COMPARISON: Table3 row21 and article Sec9/Extended Data Fig6a report different model/comparator values. Preserve both origins; do not resolve the discrepancy or rank models from this row.
- missing metadata
- dataset version: unextracted; exact input manifest: unextracted; inference budget: unreported; scoring failures: unreported