0.382662 ± 0.022467999999999998 accuracy
Graphormer · GlycanML family Accuracy · Accuracy
- Tested configuration
- Graphormer
- Protocol
- GlycanML family Accuracy: GlycanGT study: family Accuracy
- Dataset subset
- SugarBase taxonomy family; GlycanML official motif split (GlycanML split)
- Procedure
- Taxonomy: 13,209 glycans total across eight levels, 4–1,737 classes per level. Official fixed GlycanML motif-based train/validation/test splits (8:1:1). Section 2.5 reports class-balanced classifiers, train ∪ validation hyperparameter selection by randomized search with 3-fold cross-validation, followed by one evaluation on the held-out test set; complete procedure repeated with three random seeds, reporting mean and standard deviation. GlycanGT large model pretrained with 35% masking provides [Graph] embeddings to SVM/LightGBM; the selected classifier for each S4 row is not identified. Section 2.6 states that all four graph baselines were trained and evaluated on the same datasets/splits; it does not establish that each baseline used the GlycanGT downstream classifier search. SVM search: 10 iterations, RBF/linear, C logU(1e-3,1e2), gamma logU(1e-4,1e-1); LightGBM: 15 randomized iterations. Do not combine with separate original GlycanML-paper protocols.
- Evaluation
- Graphormer on GlycanML family Accuracy: GlycanGT study: family Accuracy
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- type: standard_deviation; value: 0.022467999999999998
- Evidence
- Author-reported evaluation · source checkedGlycanGT published supplementary archive, Table S4; glycangt: Journal full-text XML · btag147_supplementary_data.zip / Table_S4.xlsx / Sheet1!A90:E90 (mean D90, SD E90)
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Accuracy
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.382662 ± 0.022467999999999998 Individual claims | glycangt: Journal full-text XML btag147_supplementary_data.zip / Table_S4.xlsx / Sheet1!A90:E90 (mean D90, SD E90) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Primary article XML snapshot | source checked Lossless XML extraction of the full published XLSX Sheet1 rows 3–105; original stored numeric strings retained, scientific notation expanded exactly with decimal arithmetic, no recomputed scores; independently cross-checked against artifact-tool workbook import. · 2026-09-23 author reported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Extraction artifact SHA-256: |
| Reported result 0.382662 ± 0.022467999999999998 Individual claims | GlycanGT published supplementary archive, Table S4 btag147_supplementary_data.zip / Table_S4.xlsx / Sheet1!A90:E90 (mean D90, SD E90) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Published Bioinformatics btag147 supplementary archive, retrieved 2026-09-23; Table_S4.xlsx SHA-256 d7c35909bac6bcb78ca8fdb32c0463f05e692f15861a8184e65e415e7216f493 | source checked Lossless XML extraction of the full published XLSX Sheet1 rows 3–105; original stored numeric strings retained, scientific notation expanded exactly with decimal arithmetic, no recomputed scores; independently cross-checked against artifact-tool workbook import. · 2026-09-23 author reported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
2 source records and release history
- GlycanGT published supplementary archive, Table S4 · Original source · Published Bioinformatics btag147 supplementary archive, retrieved 2026-09-23; Table_S4.xlsx SHA-256 d7c35909bac6bcb78ca8fdb32c0463f05e692f15861a8184e65e415e7216f493
- glycangt: Journal full-text XML · Original source · Primary article XML snapshot
Technical metadata and extraction receipts
Stable ID: glycangt-2026-table-s4-result-graphormer-family-accuracy-accuracy
- areas
- glycans
- tasks
- GlycanGT study: family Accuracy
- metric
- accuracy
- metric direction
- higher
- unit
- fraction
- printed value
- 0.382662 ± 0.022467999999999998
- numeric value
- 0.382662
- uncertainty
- type: standard_deviation; value: 0.022467999999999998
- source locator
- btag147_supplementary_data.zip / Table_S4.xlsx / Sheet1!A90:E90 (mean D90, SD E90)
- missing metadata
- denominator: unextracted; seeds: unreported
- review
- method: Lossless XML extraction of the full published XLSX Sheet1 rows 3–105; original stored numeric strings retained, scientific notation expanded exactly with decimal arithmetic, no recomputed scores; independently cross-checked against artifact-tool workbook import.; reviewer: Codex automated source review; date: 2026-09-23; artifact sha256: 27748c6c0c0bb07b0105d274fb745fd4dfe702d34b9ee367d1ddacbc71c56ab0; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13105845/supplementaryFiles; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
- primary table member sha256
- d7c35909bac6bcb78ca8fdb32c0463f05e692f15861a8184e65e415e7216f493
- source table
- Supplementary Table S4
- evidence overlap
- Same-study reported cells, not independent new experimental evidence. Keep distinct from original GlycanML tables and reused descriptions.