0.439 ± 0.002 pearson_r
helix-mrna · mRNABench variant probes MRL-MPRA · Pearson R
- Tested pipeline
- helix-mrna
- Protocol
- mRNABench variant probes MRL-MPRA: Mean ribosome load on an MPRA library
- Dataset subset
- mRNABench MRL MPRA (mRNABench split)
- Procedure
- Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics.
- Evaluation
- helix-mrna on mRNABench variant probes MRL-MPRA: Mean ribosome load on an MPRA library
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- type: confidence_interval; confidence level: 0.95; reported half width: 0.002; aggregation: mean over ten random splits (table caption wording)
- Evidence
- Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 15, XML tr 17, column 4 (MRL-MPRA | Pearson R), model helix-mrna
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Pearson R
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.439 ± 0.002 Individual claims | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 15, XML tr 17, column 4 (MRL-MPRA | Pearson R), model helix-mrna Version: preprint archived 2025-07-08 | source checked Complete XML table transcription; independently checked exact cell strings; localization columns quarantined for conflicting metric labels. · 2026-09-23 author reported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: mrnabench-variants-2025-result-helix-mrna-mrl-mpra-pearson-r
- areas
- rna-transcriptomics
- tasks
- Mean ribosome load on an MPRA library
- metric
- pearson_r
- metric direction
- higher
- unit
- correlation
- printed value
- 0.439 ± 0.002
- numeric value
- 0.439
- uncertainty
- type: confidence_interval; confidence level: 0.95; reported half width: 0.002; aggregation: mean over ten random splits (table caption wording)
- source locator
- Table 6 (XML T3), data row 15, XML tr 17, column 4 (MRL-MPRA | Pearson R), model helix-mrna
- missing metadata
- denominator: unextracted; seeds: unreported
- review
- method: Complete XML table transcription; independently checked exact cell strings; localization columns quarantined for conflicting metric labels.; reviewer: Codex automated source review; date: 2026-09-23; artifact sha256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12265608/fullTextXML; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
- evidence experiment set id
- mrnabench-2025-linear-probing-default-splits
- evidence overlap
- Same paper experiment set: mrnabench-2025-linear-probing-default-splits. Table 2 selects a best-overall variant per family from these measurements. Do not count the summary and per-variant tables as independent evidence.