0.670 macro_f1
scBERT · scFoundation cell-type annotation comparison Zheng68K · Macro F1
- Tested pipeline
- scBERT
- Protocol
- scFoundation cell-type annotation comparison Zheng68K: Zheng68K cell-type annotation
- Dataset subset
- Zheng68K subset used in scFoundation Supplementary Table4 (scFoundation cell-type annotation comparison split)
- Procedure
- Cell-type annotation evaluated by unweighted mean of cell-type F1 scores. Each class F1=TP/(TP+0.5*(FP+FN)), defined in Supplementary Note3. Exact dataset release, split manifest, fitting and preprocessing remain unextracted.
- Evaluation
- scBERT on scFoundation cell-type annotation comparison Zheng68K: Zheng68K cell-type annotation
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Evaluation origin not reported · source checkedscFoundation primary supplement, Table4 · Supplementary Table4, PDF p16, row scBERT, column Zheng68K
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Macro F1
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.670 Individual claims | scFoundation primary supplement, Table4 Supplementary Table4, PDF p16, row scBERT, column Zheng68K Version: 10.1038/s41592-024-02305-7 publisher supplement | source checked Exact printed values transcribed from the complete primary supplement table; independently checked against the rendered PDF page and pdftotext output. Not model execution. · 2026-09-23 unreported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
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Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- scFoundation primary supplement, Table4 · Original source · 10.1038/s41592-024-02305-7 publisher supplement
Technical metadata and extraction receipts
Stable ID: scfoundation-2024-supp-table4-result-scbert-zheng68k-macro-f1
- areas
- cells-spatial-multiomics
- tasks
- Zheng68K cell-type annotation
- metric
- macro_f1
- metric direction
- higher
- unit
- fraction
- printed value
- 0.670
- numeric value
- 0.670
- uncertainty
- Not reported
- source locator
- Supplementary Table4, PDF p16, row scBERT, column Zheng68K
- missing metadata
- denominator: unextracted; seeds: unreported
- review
- method: Exact printed values transcribed from the complete primary supplement table; independently checked against the rendered PDF page and pdftotext output. Not model execution.; reviewer: Codex automated primary-source review; date: 2026-09-23; artifact sha256: 9ef9ed1b87014fb72b22cfc99a5382b01e6a6395a0c5de36921d155848162ae1; retrieval url: https://static-content.springer.com/esm/art%3A10.1038%2Fs41592-024-02305-7/MediaObjects/41592_2024_2305_MOESM1_ESM.pdf; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
- evidence overlap
- Complete Table4, one cell-type classification score per method/dataset. scFoundation Zheng68K 0.736 is also Table2 scale-100M; no additional independent run implied.