Result

0.06 (± 0.014) mcc

SegmentNT-30kb · SegmentNT human genome annotation lncRNA MCC · Matthews correlation coefficient

Tested configuration: SegmentNT-30kb
Protocol: SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)
Dataset subset: Human genome lncRNA test chromosomes 20 and 21 (SegmentNT human genome annotation split)
Related family profiles: SegmentNT
Procedure: Test chromosomes 20 and 21; validation chromosome 22; training remaining chromosomes. Test chunks with genes homologous to train/validation genes excluded using Ensembl BioMart accessed 2024-05-08; homologous distal regulatory elements not excluded. Ten test-set samplings with sliding windows beginning at different genomic starting positions. Mean plus reported standard deviation; not ten training seeds. Best validation checkpoint by average MCC across 14 elements. Per-nucleotide predictions pooled across test sequences separately for each genomic element. MCC and auPRC are separate metrics, not cross-element or cross-table pooled comparisons.
Evaluation: SegmentNT-30kb on SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)
Coverage: scored: unreported; eligible: unreported
Uncertainty: type: standard_deviation; value: 0.014
Evidence: Author-reported evaluation · source checkedSegmentNT supplementary information: complete Tables 2 and 3 · Supplementary Table 2; PDF page 4 (printed 3); block 2; data row 17; model SegmentNT-30kb; column lncRNA

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Matthews correlation coefficient

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-23-2b89723c6dd9
Property and statement	Original source and location	Review and provenance
Reported result 0.06 (± 0.014) Individual claims	SegmentNT supplementary information: complete Tables 2 and 3 Original source ↗ Supplementary Table 2; PDF page 4 (printed 3); block 2; data row 17; model SegmentNT-30kb; column lncRNA Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot Retrieved: 2026-09-23T11:23:43.985410+00:00	source checked Pinned supplementary PDF parsed with pdftotext -layout; exact printed values and standard deviations retained; 21 rows ×14 elements ×2 metrics checked and both complete table pages visually reviewed. No model execution. · 2026-09-23 author reported Audit details Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: `attributes.printed_value` Source artifact SHA-256: `c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f` Extraction artifact

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Release 2026-09-23-2b89723c6dd9 · Record review: source checked

1 source records and release history

SegmentNT supplementary information: complete Tables 2 and 3 · Original source · Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot

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Technical metadata and extraction receipts

Stable ID: segmentnt-supplement-2025-result-segmentnt-30kb-lncrna-mcc-mcc

areas: genomics
tasks: lncRNA: per-nucleotide annotation (MCC)
metric: mcc
metric direction: higher
unit: dimensionless
printed value: 0.06 (± 0.014)
numeric value: 0.06
uncertainty: type: standard_deviation; value: 0.014
source locator: Supplementary Table 2; PDF page 4 (printed 3); block 2; data row 17; model SegmentNT-30kb; column lncRNA
missing metadata: denominator: unextracted; seeds: unreported
review: method: Pinned supplementary PDF parsed with pdftotext -layout; exact printed values and standard deviations retained; 21 rows ×14 elements ×2 metrics checked and both complete table pages visually reviewed. No model execution.; reviewer: automated-source-review; date: 2026-09-23; artifact sha256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-025-02881-2/MediaObjects/41592_2025_2881_MOESM1_ESM.pdf; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
same paper experiment set: segmentnt-2025-human-genome-14-elements
source statistic: mean over ten test-set samplings
evidence overlap: Tables 2 and 3 report different metrics over the same paper experiment set. They are not independent reproductions or replications.

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evaluation: SegmentNT-30kb on SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)

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