0.02 (± 0.006) mcc
SpliceAI arch. · SegmentNT human genome annotation polyA signal MCC · Matthews correlation coefficient
- Tested configuration
- SpliceAI arch.
- Protocol
- SegmentNT human genome annotation polyA signal MCC: polyA signal: per-nucleotide annotation (MCC)
- Dataset subset
- Human genome polyA signal test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Procedure
- Test chromosomes 20 and 21; validation chromosome 22; training remaining chromosomes. Test chunks with genes homologous to train/validation genes excluded using Ensembl BioMart accessed 2024-05-08; homologous distal regulatory elements not excluded. Ten test-set samplings with sliding windows beginning at different genomic starting positions. Mean plus reported standard deviation; not ten training seeds. Best validation checkpoint by average MCC across 14 elements. Per-nucleotide predictions pooled across test sequences separately for each genomic element. MCC and auPRC are separate metrics, not cross-element or cross-table pooled comparisons.
- Evaluation
- SpliceAI arch. on SegmentNT human genome annotation polyA signal MCC: polyA signal: per-nucleotide annotation (MCC)
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- type: standard_deviation; value: 0.006
- Evidence
- Author-reported evaluation · source checkedSegmentNT supplementary information: complete Tables 2 and 3 · Supplementary Table 2; PDF page 4 (printed 3); block 2; data row 3; model SpliceAI arch.; column polyA signal
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Matthews correlation coefficient
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.02 (± 0.006) Individual claims | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 2; PDF page 4 (printed 3); block 2; data row 3; model SpliceAI arch.; column polyA signal Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | source checked Pinned supplementary PDF parsed with pdftotext -layout; exact printed values and standard deviations retained; 21 rows ×14 elements ×2 metrics checked and both complete table pages visually reviewed. No model execution. · 2026-09-23 author reported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- SegmentNT supplementary information: complete Tables 2 and 3 · Original source · Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Technical metadata and extraction receipts
Stable ID: segmentnt-supplement-2025-result-spliceai-arch-polya-signal-mcc-mcc
- areas
- genomics
- tasks
- polyA signal: per-nucleotide annotation (MCC)
- metric
- mcc
- metric direction
- higher
- unit
- dimensionless
- printed value
- 0.02 (± 0.006)
- numeric value
- 0.02
- uncertainty
- type: standard_deviation; value: 0.006
- source locator
- Supplementary Table 2; PDF page 4 (printed 3); block 2; data row 3; model SpliceAI arch.; column polyA signal
- missing metadata
- denominator: unextracted; seeds: unreported
- review
- method: Pinned supplementary PDF parsed with pdftotext -layout; exact printed values and standard deviations retained; 21 rows ×14 elements ×2 metrics checked and both complete table pages visually reviewed. No model execution.; reviewer: automated-source-review; date: 2026-09-23; artifact sha256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-025-02881-2/MediaObjects/41592_2025_2881_MOESM1_ESM.pdf; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
- same paper experiment set
- segmentnt-2025-human-genome-14-elements
- source statistic
- mean over ten test-set samplings
- evidence overlap
- Tables 2 and 3 report different metrics over the same paper experiment set. They are not independent reproductions or replications.