rewire.it
Paper-reported evidence

GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT

2024 · Preprint · PMC archival version PMC10614824.2

Paper-reported results. The values below come from this source, not an independent rewire.it run.

Open primary paper →DOI: 10.1101/2023.10.16.562533

Primary full text verified using Europe PMC XML; venue: bioRxiv; PMC ID: PMC10614824.

2 verified numerical rows · source checked 2026-09-15

Paper-reportedAuthor's model

GenePT-w

Cell-type structure in frozen embeddings

Reported score
0.54
Metric
Adjusted Rand Index
Dataset / split
Aorta single-cell dataset

k-means on pretrained cell embeddings; agreement with original cell-type labels.

Table 2, Aorta / Cell type row, GenePT-w ARI columnVerify at source →
Paper-reportedIndependent paper evaluation

scGPT

Cell-type structure in frozen embeddings

Reported score
0.47
Metric
Adjusted Rand Index
Dataset / split
Aorta single-cell dataset

k-means on pretrained cell embeddings; agreement with original cell-type labels.

Table 2, Aorta / Cell type row, scGPT ARI columnVerify at source →