rewire.it
Paper-reported evidence

Endowing protein language models with structural knowledge

2025 · Peer-reviewed · PMC12603367.1

Paper-reported results. The values below come from this source, not an independent rewire.it run.

Open primary paper →DOI: 10.1093/bioinformatics/btaf582

Primary full text via Europe PMC XML; venue: Bioinformatics; PMC ID: PMC12603367.

2 verified numerical rows · source checked 2026-09-15

Paper-reportedIndependent paper evaluation

ESM-2

Zero-shot variant effect prediction

Reported score
0.489
Metric
Mean |Spearman rho|
Dataset / split
ProteinShake VEP datasets

Zero-shot VEP; paper averages absolute Spearman correlations.

Table 2, ESM-2 row, Zero-shot VEP Mean |ρ| columnVerify at source →
Paper-reportedAuthor's model

PST

Zero-shot variant effect prediction

Reported score
0.501
Metric
Mean |Spearman rho|
Dataset / split
ProteinShake VEP datasets

Zero-shot VEP; paper averages absolute Spearman correlations.

Table 2, PST row, Zero-shot VEP Mean |ρ| columnVerify at source →