rewire.it
benchmark · task

RNA splice-site mapping

Where are splice donor and acceptor sites in a sequence?

0 evaluations · 0 metric rows

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typeGeneric task; proposed designRNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted
InputsPredict splice-site classes from transcript sequence, using a held-out gene split.RNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted
AssessmentNo single dataset, split or scoring implementation is fixed by this task recordRNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
SplitsNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Proposed evaluation design

Conceptual design only. This generic task has no fixed executable protocol and does not imply a completed run.

Proposed evaluation designDefine sequence and site labels. Then: Withhold genes. Then: Predict donor and acceptor sites. Then: Score site recognitionDefine sequence and site labelsWithhold genesPredict donor and acceptor sitesScore site recognition
Read the diagram as text
  1. Define sequence and site labels
  2. Withhold genes
  3. Predict donor and acceptor sites
  4. Score site recognition
RNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted

Proposed comparison design

Define the sequence convention, splice-site labels and a held-out gene split before fitting and evaluating the predictor.

RNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted

Tested models and results

Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.

No evaluations linked in this release.

Strengths and limitations

Strengths and considerations

  • Gene-held-out assessment addresses reuse of closely related transcript context.RNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted

Limitations and conditions

  • Splice-site recognition and predicting a variant-induced change in splicing are different tasks.RNA-FM official resource; MIMIC official resource · Catalogue task scope and proposed comparison design; concrete source protocol has not yet been extracted
Profile review details

Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.

Stable record: catalog-task-rna-splice-sites

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: discovered

Download this release
Technical metadata and extraction receipts

Stable ID: catalog-task-rna-splice-sites

areas
rna-transcriptomes
entity level
task
version
Not reported
task
RNA splice-site mapping
scope note
Predict splice-site classes from transcript sequence, using a held-out gene split.
missing metadata
protocol version: not_yet_extracted
Related records

    Suggest a correction