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benchmark · evaluator

AMBER

AMBER scores metagenomic binning and taxonomic assignments against a supplied gold standard.

0 evaluations · 0 metric rows

At a glance

Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typeEvaluatorCAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample
InputsPredicted bin assignments and gold-standard assignmentsCAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample
Outputs and assessmentBinning accuracy and completeness summariesCAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
SplitsNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Procedure overview

Conceptual overview of the cited procedure; consult the pinned source for executable settings.

Procedure overviewSequence assignments. Then: Match reference bins. Then: Compute bin and sample metricsSequence assignmentsMatch reference binsCompute bin and sample metrics
Read the diagram as text
  1. Sequence assignments
  2. Match reference bins
  3. Compute bin and sample metrics
CAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample

Procedure

Provide predicted and reference sequence assignments in the documented binning format. AMBER reports bin-level and sample-level summaries and comparative plots; the reference and sample identifiers must match.

CAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample

Tested models and results

Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.

No evaluations linked in this release.

Strengths and limitations

Strengths supported by sources

  • Separates individual-bin quality from sample-wide performance.CAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample

Limitations and conditions

  • An evaluator does not define the held-out community, database version or tool fitting procedure.CAMI-challenge/AMBER official source · README: introduction; User guide / Input; Metrics computed per bin and per sample
Profile review details

Primary-source description checked by an automated research assistant. This is a profile review, not an independent execution or numerical reproduction.

Stable record: discovery-benchmark-amber

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: discovered

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Technical metadata and extraction receipts

Stable ID: discovery-benchmark-amber

areas
microbiome
entity level
evaluator
missing metadata
dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
scope note
Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
task
Genome reconstruction and taxonomic assignment evaluation
version
Not reported
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