Strengths supported by sources
- A shared probing protocol separates representation quality from model-specific fine-tuning.darlednik/GENEB official source · README: Benchmark; Evaluation protocol; Evaluate your model
benchmark · suite
GENEB
GENEB compares frozen DNA representations using a shared linear probe.
At a glance
Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Frozen-representation benchmark suitedarlednik/GENEB official source · README: Benchmark; Evaluation protocol; Evaluate your model |
| Inputs | DNA classification tasks and frozen sequence embeddingsdarlednik/GENEB official source · README: Benchmark; Evaluation protocol; Evaluate your model |
| Outputs and assessment | MCC, accuracy and macro-F1 by task and categorydarlednik/GENEB official source · README: Benchmark; Evaluation protocol; Evaluate your model |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Splits | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
How it works
Conceptual overview of the cited procedure; consult the pinned source for executable settings.
Read the diagram as text
- Released DNA splits
- Frozen embeddings
- Logistic-regression probe
- Task and category metrics
Procedure
Encode each DNA sequence, pool its hidden states and fit logistic regression without fine-tuning the encoder. Evaluate released train/test partitions in full-data, ten-shot and one-shot settings using the specified repeated seeds.
darlednik/GENEB official source · README: Benchmark; Evaluation protocol; Evaluate your modelTested models and results
Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Strengths and limitations
Limitations and conditions
- This tests frozen embeddings, not the best possible fine-tuned pipeline; full-data and few-shot rankings may differ.darlednik/GENEB official source · README: Benchmark; Evaluation protocol; Evaluate your model
Profile review details
Primary-source description checked by an automated research assistant. This is a profile review, not an independent execution or numerical reproduction.
Stable record: discovery-benchmark-genebApplicable tests and references
Applicability is distinct from a completed evaluation.
- Agro Nucleotide Transformer · Proposed association
- Evo 2 · Proposed association
- Nucleotide Transformer · Proposed association
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: discovered
- darlednik/GENEB official source · Original source · 9642d481e40c0af23995dcd162b779613f789f97
Technical metadata and extraction receipts
Stable ID: discovery-benchmark-geneb
- areas
- genomics
- entity level
- suite
- missing metadata
- dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
- scope note
- Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
- task
- Frozen genomic representations with linear probes
- version
- Not reported
Related records
- applicable to: Agro Nucleotide Transformer
- applicable to: Evo 2
- applicable to: Nucleotide Transformer