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NABench

NABench evaluates nucleotide models against measured DNA and RNA fitness.

0 evaluations · 0 metric rows

At a glance

Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typeFitness benchmark suitemrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources
InputsDNA or RNA mutant sequences and assay measurementsmrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources
Outputs and assessmentFitness prediction across distinct adaptation regimesmrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
SplitsNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Procedure overview

Conceptual overview of the cited procedure; consult the pinned source for executable settings.

Procedure overviewSelect assay and regime. Then: Score nucleotide variants. Then: Compare experimental fitness. Then: Summarize by assaySelect assay and regimeScore nucleotide variantsCompare experimental fitnessSummarize by assay
Read the diagram as text
  1. Select assay and regime
  2. Score nucleotide variants
  3. Compare experimental fitness
  4. Summarize by assay
mrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources

Procedure

Select a nucleic-acid assay and evaluation setting: zero-shot, few-shot, supervised or transfer learning. Compare predictions with the matched assay measurements using that setting's protocol.

mrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources

Tested models and results

Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.

No evaluations linked in this release.

Strengths and limitations

Strengths supported by sources

  • Collects diverse high-throughput nucleotide assays under a common framework.mrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources

Limitations and conditions

  • Different molecule families and training regimes remain different prediction problems; assay coverage must accompany aggregate scores.mrzzmrzz/NABench official source · README: Overview; Leaderboard; Baseline Models; Resources
Profile review details

Primary-source description checked by an automated research assistant. This is a profile review, not an independent execution or numerical reproduction.

Stable record: discovery-benchmark-nabench

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: discovered

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Technical metadata and extraction receipts

Stable ID: discovery-benchmark-nabench

areas
rna
entity level
suite
missing metadata
dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
scope note
Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
task
DNA and RNA fitness prediction
version
Not reported
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