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OPAL

OPAL evaluates predicted microbial taxon abundances.

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At a glance

Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typeEvaluatorCAMI-challenge/OPAL official source · README: opening; Computed metrics; Inputs; Running opal.py
InputsPredicted and reference taxonomic abundance profilesCAMI-challenge/OPAL official source · README: opening; Computed metrics; Inputs; Running opal.py
Outputs and assessmentTaxonomic profile performance summariesCAMI-challenge/OPAL official source · README: opening; Computed metrics; Inputs; Running opal.py
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
SplitsNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Procedure overview

Conceptual overview of the cited procedure; consult the pinned source for executable settings.

Procedure overviewTaxon abundance profiles. Then: Align ranks and references. Then: Compute profile metrics. Then: Compare profilersTaxon abundance profilesAlign ranks and referencesCompute profile metricsCompare profilers
Read the diagram as text
  1. Taxon abundance profiles
  2. Align ranks and references
  3. Compute profile metrics
  4. Compare profilers
CAMI-challenge/OPAL official source · README: opening; Computed metrics; Inputs; Running opal.py

Procedure

Supply predicted and gold-standard profiles in the documented taxonomic format. Evaluate presence and abundance agreement for matched samples and taxonomic ranks.

CAMI-challenge/OPAL official source · README: opening; Computed metrics; Inputs; Running opal.py

Tested models and results

Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.

No evaluations linked in this release.

Strengths and limitations

Strengths supported by sources

Limitations and conditions

  • Taxonomy identifiers and ranks must agree with the reference; profiling does not assign each read to a bin.CAMI-challenge/OPAL official source · README: opening; Computed metrics; Inputs; Running opal.py
Profile review details

Primary-source description checked by an automated research assistant. This is a profile review, not an independent execution or numerical reproduction.

Stable record: discovery-benchmark-opal

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: discovered

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Technical metadata and extraction receipts

Stable ID: discovery-benchmark-opal

areas
microbiome
entity level
evaluator
missing metadata
dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
scope note
Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
task
Metagenomic taxonomic profile evaluation
version
Not reported
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