Strengths supported by sources
- Similarity annotations and stratified test sets help make generalization explicit.plinder-org/plinder official source · README: About; Plinder versions; Gold standard benchmark sets; Known bugs
benchmark · suite
PLINDER
PLINDER combines protein–ligand interaction data with evaluation resources.
At a glance
Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Dataset and evaluation resourceplinder-org/plinder official source · README: About; Plinder versions; Gold standard benchmark sets; Known bugs |
| Inputs | Protein–ligand structures and annotated splitsplinder-org/plinder official source · README: About; Plinder versions; Gold standard benchmark sets; Known bugs |
| Outputs and assessment | Docking evaluation on specified novelty strataplinder-org/plinder official source · README: About; Plinder versions; Gold standard benchmark sets; Known bugs |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Splits | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
How it works
Conceptual overview of the cited procedure; consult the pinned source for executable settings.
Read the diagram as text
- Pin data release
- Choose novelty split
- Predict complexes
- Evaluate selected subset
Procedure
Pin the dataset release and iteration, choose a train/validation/test partition and evaluate a docking method on the selected held-out subset. Test subsets distinguish ligand, pocket and protein novelty.
plinder-org/plinder official source · README: About; Plinder versions; Gold standard benchmark sets; Known bugsTested models and results
Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Strengths and limitations
Limitations and conditions
- Dataset release-date corrections and split revisions can change membership; the two-part data version must be retained.plinder-org/plinder official source · README: About; Plinder versions; Gold standard benchmark sets; Known bugs
Profile review details
Primary-source description checked by an automated research assistant. This is a profile review, not an independent execution or numerical reproduction.
Stable record: discovery-benchmark-plinderApplicable tests and references
Applicability is distinct from a completed evaluation.
- Classical molecular docking · proposed
- AlphaFold 3 · Proposed association
- Boltz · Proposed association
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: discovered
- plinder-org/plinder official source · Original source · 85b3f1cb1763530a6cfd934f4263a1777c41afa4
Technical metadata and extraction receipts
Stable ID: discovery-benchmark-plinder
- areas
- molecular-interactions
- entity level
- suite
- missing metadata
- dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
- scope note
- Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
- task
- Protein-ligand interaction evaluation
- version
- Not reported
Related records
- applicable to: Classical molecular docking
- applicable to: AlphaFold 3
- applicable to: Boltz