Strengths and considerations
- Includes simple one-hot comparators alongside pretrained representations.songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Contact Prediction
benchmark · task
TAPE Contact Prediction
Predict residue contacts from protein sequence.
At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Component tasksonglab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Contact Prediction |
| Inputs | ProteinNet sequence and structural-contact labelssonglab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Contact Prediction |
| Outputs and assessment | Precision among the top L/5 medium- and long-range contactssonglab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Contact Prediction |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Splits | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
How it works
Conceptual component-task overview. Exact data versions, split files and scorer settings must be taken from the source.
Read the diagram as text
- ProteinNet sequence and structural-contact labels
- TAPE Contact Prediction
- Precision among the top L/5 medium- and long-range contacts
Procedure
This is the TAPE Contact Prediction component, not the parent suite as a whole. Choose secondary structure, contact prediction, remote homology, fluorescence or stability. Train a task head and evaluate using the corresponding data and metric. The current PyTorch repository differs from the original publication code.
songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Contact PredictionConnected tasks and protocols
- TAPE · suite · part of
These associations do not imply identical protocols or interchangeable scores.
Tested models and results
Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Strengths and limitations
Limitations and conditions
- The maintainers explicitly advise using the original implementation to reproduce the original paper.songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Contact Prediction
Profile review details
Existing catalogue evidence and cited extraction inspected. The specific protocol gaps listed here remain unresolved; numerical source checks do not constitute complete methods review.
Stable record: discovery-benchmark-tape-contact-predictionSources and history
Release 2026-09-16-d74d282221a9 · Record review: discovered
- songlab-cal/tape official source · Original source · 6d345c2b2bbf52cd32cf179325c222afd92aec7e
Technical metadata and extraction receipts
Stable ID: discovery-benchmark-tape-contact-prediction
- areas
- protein-function
- entity level
- task
- missing metadata
- dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
- scope note
- Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
- task
- Contact Prediction
- version
- Not reported
Related records
- parent: TAPE
- part of: TAPE
- subject: TAPE Contact Prediction: part of TAPE