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benchmark · task

TAPE Secondary Structure

Predict secondary-structure labels for protein residues.

0 evaluations · 0 metric rows

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typeComponent tasksonglab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure
InputsProtein sequences and residue labelssonglab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure
Outputs and assessmentThree-class accuracysonglab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
SplitsNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Component evaluation overview

Conceptual component-task overview. Exact data versions, split files and scorer settings must be taken from the source.

Component evaluation overviewProtein sequences and residue labels. Then: TAPE Secondary Structure. Then: Three-class accuracyProtein sequences and residuelabelsTAPE Secondary StructureThree-class accuracy
Read the diagram as text
  1. Protein sequences and residue labels
  2. TAPE Secondary Structure
  3. Three-class accuracy
songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure

Procedure

This is the TAPE Secondary Structure component, not the parent suite as a whole. Choose secondary structure, contact prediction, remote homology, fluorescence or stability. Train a task head and evaluate using the corresponding data and metric. The current PyTorch repository differs from the original publication code.

songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure

Connected tasks and protocols

  • TAPE · suite · part of

These associations do not imply identical protocols or interchangeable scores.

Tested models and results

Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.

No evaluations linked in this release.

Strengths and limitations

Strengths and considerations

  • Includes simple one-hot comparators alongside pretrained representations.songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure

Limitations and conditions

  • The maintainers explicitly advise using the original implementation to reproduce the original paper.songlab-cal/tape official source · README: List of Models and Tasks; Data; Leaderboard / Secondary Structure
Profile review details

Existing catalogue evidence and cited extraction inspected. The specific protocol gaps listed here remain unresolved; numerical source checks do not constitute complete methods review.

Stable record: discovery-benchmark-tape-secondary-structure

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: discovered

Download this release
Technical metadata and extraction receipts

Stable ID: discovery-benchmark-tape-secondary-structure

areas
protein-function
entity level
task
missing metadata
dataset release: unextracted; metric implementation: unextracted; split manifest: unextracted; version: unextracted
scope note
Specialist molecular or omics evaluation; protocol details require review before numerical comparison.
task
Secondary Structure
version
Not reported
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