ESMFold2 Runs N’ Poses comparison
Bounded complete Figure 2C Runs N’ Poses subpanel: all eleven printed labels, separated into single-sequence and MSA comparisons.
Overview
Bounded complete Figure 2C Runs N’ Poses subpanel: all eleven printed labels, separated into single-sequence and MSA comparisons.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
ligand_pass_rate (percent) · Higher values are better.
Every method ESMFold2 Runs N’ Poses reported comparison reports on Runs N’ Poses ligand pass rate (MSA), scored with Ligand pass rate on Runs N’ Poses complete-case intersection: 2,573 scored ligands.
ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA) · Runs N’ Poses complete-case intersection: 2,573 scored ligands (ESMFold2 Runs N’ Poses reported comparison split)
Evidence origin: Author-reported evaluation. Numerical source review does not establish independent reproduction.
ESMFold2 primary paper v1, Figure 2C Runs N’ Poses · Figure 2C right subpanel; Appendix A.2.10 Runs N’ Poses, PDF pages 5, 46–47Author-reported integer-rounded labels from the original figure, not raw unrounded scores or independent reproductions. All 11 labelled bars in this subpanel are retained.
All comparison limitations (5)
- Author-reported integer-rounded labels from the original figure, not raw unrounded scores or independent reproductions. All 11 labelled bars in this subpanel are retained.
- The two panels separate single-sequence and MSA conditioning. Loop counts, inference settings and model versions remain in configuration labels.
- n=2,573 counts scored ligands, not independent receptor systems. Results use the source’s complete-case intersection and omit ligands without defined SuCOS scores.
- The source shows graphical ±1 sigma uncertainty from 200 bootstrap resamples. Exact error-bar values are not printed in this subpanel and remain unextracted; no numerical uncertainty was estimated.
- The general OpenFold family record describes OpenFold/AlphaFold2; this OpenFold3 baseline receives no unsupported family link. Protenix-v1 also remains an independently named baseline.
Automated source review: 2026-09-23.
No unavailable values; missing scores remain labelled and are never plotted as zero.
Showing 7 of 7 matching rows.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Protocols
These source-backed links do not make different protocols or scores interchangeable.
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
0 of 4 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
Baseline status by linked protocol
Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-23-2b89723c6dd9. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run this benchmark
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Run instructions
No runnable recipe has been reviewed for this benchmark. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
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Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- ESMFold2 primary paper v1, Figure 2C Runs N’ Poses · Original source · 10.64898/2026.06.03.729735v1; posted 2026-06-04
Technical metadata and extraction receipts
Stable ID: model-coverage-esmfold2-runs-n-poses
- areas
- proteins-complexes
- entity level
- suite
- source locator
- Figure 2C right subpanel; Appendix A.2.10, PDF pages 5, 46–47
- missing metadata
- runner: unavailable; split manifest: unextracted