This paper-specific evaluation tests Combinatorial cell-label classification using L1000.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedCell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / C2S (GPT-2 Large) row, L1000 Acc column; Table 3, Partial label / Geneformer row, L1000 Acc column |
| Inputs | L1000Cell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / C2S (GPT-2 Large) row, L1000 Acc column; Table 3, Partial label / Geneformer row, L1000 Acc column |
| Assessment | Partial-label accuracyCell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / C2S (GPT-2 Large) row, L1000 Acc column; Table 3, Partial label / Geneformer row, L1000 Acc column |
| Recorded split or evaluation setting | UnextractedCell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / C2S (GPT-2 Large) row, L1000 Acc column; Table 3, Partial label / Geneformer row, L1000 Acc column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Partial-credit labels including cell type, perturbation, and dose. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Cell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / C2S (GPT-2 Large) row, L1000 Acc column; Table 3, Partial label / Geneformer row, L1000 Acc columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| C2S (GPT-2 Large): Combinatorial cell-label classification Partial-credit labels including cell type, perturbation, and dose. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.631 Partial-label accuracy Unit: unitless · Direction: unknown | Uncertainty: ± 0.0031 Scored: Not reported · Eligible: Not reported | source checkedCell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / C2S (GPT-2 Large) row, L1000 Acc column Source checking is not independent reproduction. |
| Geneformer: Combinatorial cell-label classification Partial-credit labels including cell type, perturbation, and dose. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.419 Partial-label accuracy Unit: unitless · Direction: unknown | Uncertainty: ± 0.0153 Scored: Not reported · Eligible: Not reported | source checkedCell2Sentence: Teaching Large Language Models the Language of Biology · Table 3, Partial label / Geneformer row, L1000 Acc column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-7efe245cc94ee5Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-7efe245cc94ee5