This paper-specific evaluation tests gene-regulatory signal prediction using immune tissue.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column |
| Inputs | immune tissueResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column |
| Assessment | AUROCResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column |
| Recorded split or evaluation setting | UnextractedResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Asymmetric extraction, PCA-64 centered cosine geometry added to scGPT baseline. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Residual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC columnRelease 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scGPT + residual geometry: gene-regulatory signal prediction Model: scGPT + residual geometry · Benchmark: gene-regulatory signal prediction · Dataset: immune tissue Asymmetric extraction, PCA-64 centered cosine geometry added to scGPT baseline Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.677 AUROC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedResidual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues · Table 4, Immune row, scGPT > +geom AUROC column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-99afd88cb12895Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-99afd88cb12895