benchmark · task

regulatory-variant scoring

This paper-specific evaluation tests regulatory-variant scoring using Yoruban LCL dsQTLs.

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
Property	Description and evidence
Record type	Paper-specific task; protocol incompletely extractedShort-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column
Inputs	Yoruban LCL dsQTLsShort-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column
Assessment	AUROCShort-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column
Recorded split or evaluation setting	UnextractedShort-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column
Datasets	Not extracted or verified for this record.
Organisms	Not extracted or verified for this record.
Assays	Not extracted or verified for this record.
Adaptation	Not extracted or verified for this record.
Baselines	Not extracted or verified for this record.

How it works

Reported evaluation outline

Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.

Read the diagram as text

Yoruban LCL dsQTLs
Recorded fitting or scoring procedure
Assess AUROC

Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column

Evaluation context

The existing paper extraction describes: Supervised ChromBPNet variant scoring with ARSENAL motif-discovery regularization. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.

Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column

Tested models and results

Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluated configurationMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
ARSENAL+ChromBPNet: regulatory-variant scoring Model: ARSENAL+ChromBPNet · Benchmark: regulatory-variant scoring · Dataset: Yoruban LCL dsQTLs Supervised ChromBPNet variant scoring with ARSENAL motif-discovery regularization Author-reported evaluation · Evaluation metadata: needs review
0.896 AUROC Unit: fraction · Direction: unknown	Uncertainty: ±0.016 Scored: Not reported · Eligible: Not reported	source checkedShort-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column Source checking is not independent reproduction.

Strengths and limitations

Strengths and considerations

The linked evaluation identifies the paper-specific dataset and assessment rather than treating the task name as a universal benchmark.Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column

Limitations and conditions

The numerical table check does not establish the full data-processing, fitting or leakage-control protocol.Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Table 1, Yoruban LCL dsQTLs section, ARSENAL+ChromBPNet row, AUROC column

Profile review details

Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.

Stable record: reported-task-b9199a30a0bcb2

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: needs review

Short-Context Regulatory DNA Language Models with Motif-Discovery Regularization · Original source · preprint version in PMC

Download this release

Technical metadata and extraction receipts

Stable ID: reported-task-b9199a30a0bcb2

areas: dna-genomes
tasks: regulatory-variant scoring
entity level: task
version: Not reported
task: regulatory-variant scoring
scope note: Paper-specific evaluation task; protocol completeness requires further extraction.
missing metadata: protocol version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract

Related records

dataset: Yoruban LCL dsQTLs
benchmark: ARSENAL+ChromBPNet: regulatory-variant scoring

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