This paper-specific evaluation tests G-quadruplex classification using KEx.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedBenchmarking DNA large language models on quadruplexes · Table 5, DNABERT-2 (117 M) row, Accuracy column; Table 5, Caduceus (8 M) row, Accuracy column |
| Inputs | KExBenchmarking DNA large language models on quadruplexes · Table 5, DNABERT-2 (117 M) row, Accuracy column; Table 5, Caduceus (8 M) row, Accuracy column |
| Assessment | AccuracyBenchmarking DNA large language models on quadruplexes · Table 5, DNABERT-2 (117 M) row, Accuracy column; Table 5, Caduceus (8 M) row, Accuracy column |
| Recorded split or evaluation setting | UnextractedBenchmarking DNA large language models on quadruplexes · Table 5, DNABERT-2 (117 M) row, Accuracy column; Table 5, Caduceus (8 M) row, Accuracy column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Pretrained model evaluated on KEx as reported in Table 5. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Benchmarking DNA large language models on quadruplexes · Table 5, DNABERT-2 (117 M) row, Accuracy column; Table 5, Caduceus (8 M) row, Accuracy columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2: G-quadruplex classification Pretrained model evaluated on KEx as reported in Table 5. Independent external evaluation · Evaluation metadata: needs review | ||
| 97.0 Accuracy Unit: % · Direction: unknown | Uncertainty: ± 0.5 Scored: Not reported · Eligible: Not reported | source checkedBenchmarking DNA large language models on quadruplexes · Table 5, DNABERT-2 (117 M) row, Accuracy column Source checking is not independent reproduction. |
| Caduceus: G-quadruplex classification Pretrained model evaluated on KEx as reported in Table 5. Independent external evaluation · Evaluation metadata: needs review | ||
| 95.0 Accuracy Unit: % · Direction: unknown | Uncertainty: ± 0.5 Scored: Not reported · Eligible: Not reported | source checkedBenchmarking DNA large language models on quadruplexes · Table 5, Caduceus (8 M) row, Accuracy column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-c9d2a6435979e9Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-c9d2a6435979e9