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benchmark · protocol

MFASS v1 (superseded)

MFASS v1 is an archived protocol with an invalid baseline-window implementation.

0 evaluations · 0 metric rows

At a glance

Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typeSuperseded protocolMFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/
InputsHistorical MFASS variant featuresMFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/
AssessmentArchived results, withdrawn as current baseline evidenceMFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
SplitsNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Correction history

Historical correction path. Do not use the superseded v1 baseline for current model selection.

Correction historyOriginal raw-sequence windows. Then: Orientation mismatch identified. Then: Assay-oriented pairs validated. Then: Use corrected v2 comparisonsOriginal raw-sequence windowsOrientation mismatch identifiedAssay-oriented pairs validatedUse corrected v2 comparisons
Read the diagram as text
  1. Original raw-sequence windows
  2. Orientation mismatch identified
  3. Assay-oriented pairs validated
  4. Use corrected v2 comparisons
MFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/

Procedure

The original sequence field was combined with assay-oriented coordinates. For 7,770 eligible variants, the field was reverse complemented and the local feature window was centred incorrectly. Use v2 for current baseline comparisons; retain v1 only to audit the correction.

MFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/

Connected tasks and protocols

These associations do not imply identical protocols or interchangeable scores.

Tested models and results

Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.

No evaluations linked in this release.

Strengths and limitations

Strengths supported by sources

  • Preserving the original artifacts makes the scientific correction inspectable.MFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/

Limitations and conditions

  • Do not use v1 baseline comparisons or split-cost claims to select a current method.MFASS v2 pinned rewire artifacts · benchmarks/mfass/README.md at bee9133b83f3aedaf2bbb9013f1875515845607e: Correction; Dataset; Cohort reconciliation; Split; results JSON in benchmarks/mfass/results/
Profile review details

Primary-source description checked by an automated research assistant. This is profile review, not independent execution or numerical reproduction.

Stable record: rewire-mfass-v1

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: superseded

Superseded by MFASS v2

Download this release
Technical metadata and extraction receipts

Stable ID: rewire-mfass-v1

areas
dna-genomes
entity level
protocol
version
v1
task
Splice-variant prioritisation
scope note
The mfass-v1 baseline used a mis-centred k-mer window for 7,770 assay variants whose raw sequence was reverse-complemented. mfass-v2 validates assay-oriented reference and mutant pairs and rebuilds the baseline; mfass-v1 remains a historical record.
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