SugarBase taxonomy · Family
Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
Dataset and evaluation context
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Evaluation results
Release 2026-09-17-d277315f7d76 · 22 evaluations · 22 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Shallow CNN: SugarBase taxonomy · Family Configuration: Shallow CNNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 45.27(1.52)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.52; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Family Source checking is not independent reproduction. |
| Shallow CNN / DWA: SugarBase taxonomy · Family Configuration: Shallow CNN / DWAProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 41.57(2.17)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.17; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, DWA, column Family Source checking is not independent reproduction. |
| CompGCN: SugarBase taxonomy · Family Configuration: CompGCNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.03(1.51)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.51; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row CompGCN, column Family Source checking is not independent reproduction. |
| GCN: SugarBase taxonomy · Family Configuration: GCNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 34.93(0.76)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.76; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GCN, column Family Source checking is not independent reproduction. |
| Shallow CNN / GN: SugarBase taxonomy · Family Configuration: Shallow CNN / GNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 42.40(1.49)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.49; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, GN, column Family Source checking is not independent reproduction. |
| RGCN / DWA: SugarBase taxonomy · Family Configuration: RGCN / DWAProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.11(1.24)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.24; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, DWA, column Family Source checking is not independent reproduction. |
| MPNN: SugarBase taxonomy · Family Configuration: MPNNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 41.60(0.64)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.64; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row MPNN, column Family Source checking is not independent reproduction. |
| Shallow CNN / DTP: SugarBase taxonomy · Family Configuration: Shallow CNN / DTPProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 42.76(2.02)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.02; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, DTP, column Family Source checking is not independent reproduction. |
| GAT: SugarBase taxonomy · Family Configuration: GATProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 37.50(0.91)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.91; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GAT, column Family Source checking is not independent reproduction. |
| RGCN / GN: SugarBase taxonomy · Family Configuration: RGCN / GNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.11(0.13)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.13; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, GN, column Family Source checking is not independent reproduction. |
| Shallow CNN / TS: SugarBase taxonomy · Family Configuration: Shallow CNN / TSProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 45.19(2.50)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.5; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, TS, column Family Source checking is not independent reproduction. |
| GIN: SugarBase taxonomy · Family Configuration: GINProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 40.04(0.86)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.86; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GIN, column Family Source checking is not independent reproduction. |
| RGCN / N-MTL: SugarBase taxonomy · Family Configuration: RGCN / N-MTLProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 45.67(1.64)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.64; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, N-MTL, column Family Source checking is not independent reproduction. |
| RGCN / TS: SugarBase taxonomy · Family Configuration: RGCN / TSProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 47.99(0.22)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.22; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, TS, column Family Source checking is not independent reproduction. |
| Shallow CNN / N-MTL: SugarBase taxonomy · Family Configuration: Shallow CNN / N-MTLProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.11(1.63)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.63; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, N-MTL, column Family Source checking is not independent reproduction. |
| ResNet: SugarBase taxonomy · Family Configuration: ResNetProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 37.36(0.99)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.99; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row ResNet, column Family Source checking is not independent reproduction. |
| Transformer: SugarBase taxonomy · Family Configuration: TransformerProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 33.30(0.86)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.86; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Transformer, column Family Source checking is not independent reproduction. |
| Shallow CNN / UW: SugarBase taxonomy · Family Configuration: Shallow CNN / UWProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.40(0.00)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, UW, column Family Source checking is not independent reproduction. |
| RGCN / UW: SugarBase taxonomy · Family Configuration: RGCN / UWProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.90(0.88)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.88; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, UW, column Family Source checking is not independent reproduction. |
| RGCN / DTP: SugarBase taxonomy · Family Configuration: RGCN / DTPProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 44.29(0.47)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.47; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, DTP, column Family Source checking is not independent reproduction. |
| RGCN: SugarBase taxonomy · Family Configuration: RGCNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 46.35(0.50)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.5; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row RGCN, column Family Source checking is not independent reproduction. |
| LSTM: SugarBase taxonomy · Family Configuration: LSTMProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 38.74(1.47)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.47; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row LSTM, column Family Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
7 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population.note Dataset split sizes, not per-model scored counts. Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.reported_population.train_validation_test [11010,1280,919] Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, p. 8, Family Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.split SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.subset No value recorded Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name SugarBase taxonomy · Family Context-only references | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Family Version: arXiv:2405.16206v1, 2024-05-25 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Original source · arXiv:2405.16206v1, 2024-05-25
Technical metadata and extraction receipts
Stable ID: paper-dataset-8d5d79e4a6a070bfff
- areas
- glycomics
- split
- SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.
- subset
- Not reported
- reported population
- train validation test: 11010; 1280; 919; note: Dataset split sizes, not per-model scored counts.
- source locator
- Table 3, p. 8, Family
- missing metadata
- manifest: unextracted; scored count: unreported
- entity classification
- review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: expansion-p3-glycanml-2405-16206v1; source locator: Table 3, p. 8, Family; ambiguities: None recorded
Related records
- dataset: MPNN: SugarBase taxonomy · Family
- dataset: Shallow CNN: SugarBase taxonomy · Family
- dataset: Shallow CNN / TS: SugarBase taxonomy · Family
- dataset: Shallow CNN / N-MTL: SugarBase taxonomy · Family
- dataset: RGCN / UW: SugarBase taxonomy · Family
- dataset: CompGCN: SugarBase taxonomy · Family
- dataset: LSTM: SugarBase taxonomy · Family
- dataset: RGCN / DTP: SugarBase taxonomy · Family
- dataset: GIN: SugarBase taxonomy · Family
- dataset: Transformer: SugarBase taxonomy · Family
- dataset: GAT: SugarBase taxonomy · Family
- dataset: RGCN / GN: SugarBase taxonomy · Family
- dataset: RGCN / TS: SugarBase taxonomy · Family
- dataset: Shallow CNN / UW: SugarBase taxonomy · Family
- dataset: RGCN: SugarBase taxonomy · Family
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- dataset: Shallow CNN / DWA: SugarBase taxonomy · Family
- dataset: ResNet: SugarBase taxonomy · Family
- dataset: RGCN / N-MTL: SugarBase taxonomy · Family
- dataset: Shallow CNN / DTP: SugarBase taxonomy · Family
- dataset: RGCN / DWA: SugarBase taxonomy · Family
- dataset: GCN: SugarBase taxonomy · Family