DeepCRISPR (BEACON split)
The split of DeepCRISPR that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-1a18ca2c038a · 34 evaluations · 34 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| BEACON-B on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: BEACON-BTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.42(0.33)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.33 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(CRI-Off) Source checking is not independent reproduction. |
| BEACON-B on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: BEACON-BTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 26.01(1.81)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.81 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(CRI-On) Source checking is not independent reproduction. |
| BEACON-B512 on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: BEACON-B512Task: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.82(1.04)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.04 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(CRI-Off) Source checking is not independent reproduction. |
| BEACON-B512 on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: BEACON-B512Task: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 28.17(1.81)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.81 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(CRI-On) Source checking is not independent reproduction. |
| CNN on BEACON CRI-Off: CRISPR off-target effect prediction Method: CNNTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 11.40(0.10)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.10 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(CRI-Off) Source checking is not independent reproduction. |
| CNN on BEACON CRI-On: CRISPR on-target efficiency prediction Method: CNNTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.69(2.52)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.52 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(CRI-On) Source checking is not independent reproduction. |
| LSTM on BEACON CRI-Off: CRISPR off-target effect prediction Method: LSTMTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 8.60(0.13)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.13 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(CRI-Off) Source checking is not independent reproduction. |
| LSTM on BEACON CRI-On: CRISPR on-target efficiency prediction Method: LSTMTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 26.83(1.32)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.32 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(CRI-On) Source checking is not independent reproduction. |
| ResNet on BEACON CRI-Off: CRISPR off-target effect prediction Method: ResNetTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 11.50(0.22)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.22 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(CRI-Off) Source checking is not independent reproduction. |
| ResNet on BEACON CRI-On: CRISPR on-target efficiency prediction Method: ResNetTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 28.55(2.42)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.42 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(CRI-On) Source checking is not independent reproduction. |
| RNA-FM on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: RNA-FMTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.49(1.56)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.56 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(CRI-Off) Source checking is not independent reproduction. |
| RNA-FM on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: RNA-FMTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.62(1.16)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.16 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(CRI-On) Source checking is not independent reproduction. |
| RNA-MSM on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: RNA-MSMTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.85(0.99)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.99 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(CRI-Off) Source checking is not independent reproduction. |
| RNA-MSM on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: RNA-MSMTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 34.92(1.99)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.99 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(CRI-On) Source checking is not independent reproduction. |
| RNABERT on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: RNABERTTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.27(1.05)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.05 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(CRI-Off) Source checking is not independent reproduction. |
| RNABERT on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: RNABERTTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.77(3.98)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 3.98 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(CRI-On) Source checking is not independent reproduction. |
| Splice-H510 on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: Splice-H510Task: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.00(1.13)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.13 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(CRI-Off) Source checking is not independent reproduction. |
| Splice-H510 on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: Splice-H510Task: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 26.61(1.30)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.30 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(CRI-On) Source checking is not independent reproduction. |
| Splice-MS1024 on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: Splice-MS1024Task: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 5.00(0.71)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.71 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(CRI-Off) Source checking is not independent reproduction. |
| Splice-MS1024 on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: Splice-MS1024Task: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 27.59(4.61)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 4.61 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(CRI-On) Source checking is not independent reproduction. |
| Splice-MS510 on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: Splice-MS510Task: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.49(2.12)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.12 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(CRI-Off) Source checking is not independent reproduction. |
| Splice-MS510 on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: Splice-MS510Task: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 27.13(0.27)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.27 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(CRI-On) Source checking is not independent reproduction. |
| UTR-LM-MRL on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: UTR-LM-MRLTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.28(0.15)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.15 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(CRI-Off) Source checking is not independent reproduction. |
| UTR-LM-MRL on BEACON CRI-On: CRISPR on-target efficiency prediction Configuration: UTR-LM-MRLTask: BEACON CRI-On: CRISPR on-target efficiency predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 1,453/207/416; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 28.49(1.37)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.37 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(CRI-On) Source checking is not independent reproduction. |
| UTR-LM-TE&EL on BEACON CRI-Off: CRISPR off-target effect prediction Configuration: UTR-LM-TE&ELTask: BEACON CRI-Off: CRISPR off-target effect predictionDataset subset: DeepCRISPR (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,223/2,032/4,064; dataset DeepCRISPR. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.91(1.18)% spearman_corr Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.18 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(CRI-Off) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.source_locator Table1,p.6,column(Source/Venue) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description The split of DeepCRISPR that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits. Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name DeepCRISPR (BEACON split) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-1a18ca2c038a · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-dataset-deepcrispr
- areas
- rna-transcriptomes
- source locator
- Table1,p.6,column(Source/Venue)
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: BEACON-B on BEACON CRI-Off: CRISPR off-target effect prediction
- dataset: BEACON-B on BEACON CRI-On: CRISPR on-target efficiency prediction
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- dataset: BEACON-B512 on BEACON CRI-On: CRISPR on-target efficiency prediction
- dataset: CNN on BEACON CRI-Off: CRISPR off-target effect prediction
- dataset: CNN on BEACON CRI-On: CRISPR on-target efficiency prediction
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- dataset: ResNet on BEACON CRI-On: CRISPR on-target efficiency prediction
- dataset: RNA-FM on BEACON CRI-Off: CRISPR off-target effect prediction
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- dataset: RNA-MSM on BEACON CRI-Off: CRISPR off-target effect prediction
- dataset: RNA-MSM on BEACON CRI-On: CRISPR on-target efficiency prediction
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