GUE Transcription factor prediction (mouse), 2 (GUE split)
The split of GUE Transcription factor prediction (mouse), 2 that GUE evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-134cd1815de8 · 10 evaluations · 10 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2 (further pre-trained on GUE) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: DNABERT-2 (further pre-trained on GUE)Task: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 81.28% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT-2♦), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| DNABERT-2 on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: DNABERT-2Task: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 79.32% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT-2), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| DNABERT (3-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: DNABERT (3-mer)Task: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 69.90% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (3-mer)), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| DNABERT (4-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: DNABERT (4-mer)Task: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.62% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (4-mer)), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| DNABERT (5-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: DNABERT (5-mer)Task: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 62.22% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (5-mer)), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| DNABERT (6-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: DNABERT (6-mer)Task: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 71.44% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (6-mer)), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| NT-2500M-1000g on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: NT-2500M-1000gTask: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 70.14% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-2500M-1000g), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| NT-2500M-multi on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: NT-2500M-multiTask: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 71.52% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-2500M-multi), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| NT-500M-1000g on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: NT-500M-1000gTask: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 64.70% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-500M-1000g), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
| NT-500M-human on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2 Configuration: NT-500M-humanTask: GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2Dataset subset: GUE Transcription factor prediction (mouse), 2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 61.67% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-500M-human), column(Transcription factor prediction (mouse) 2) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of GUE Transcription factor prediction (mouse), 2 that GUE evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name GUE Transcription factor prediction (mouse), 2 (GUE split) Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: gue-dataset-gue-transcription-factor-prediction-mouse-2
- areas
- dna-genomes
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: DNABERT-2 (further pre-trained on GUE) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: DNABERT-2 on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: DNABERT (3-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: DNABERT (4-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: DNABERT (5-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: DNABERT (6-mer) on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: NT-2500M-1000g on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: NT-2500M-multi on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: NT-500M-1000g on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2
- dataset: NT-500M-human on GUE TRANSCRIPTION-FACTOR-PREDICTION-MOUSE-2: Transcription factor prediction (mouse), dataset 2