HEST-Benchmark PAAD (HEST-Benchmark split)
The split of HEST-Benchmark PAAD that HEST-Benchmark evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-134cd1815de8 · 10 evaluations · 10 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Ciga on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: CigaTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.397 ±0.07 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.07 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(Ciga) Source checking is not independent reproduction. |
| CONCH on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: CONCHTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.431 ±0.05 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.05 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(CONCH) Source checking is not independent reproduction. |
| CTransPath on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: CTransPathTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.406 ±0.08 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.08 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(CTransPath) Source checking is not independent reproduction. |
| GigaPath on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: GigaPathTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.425 ±0.07 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.07 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(GigaPath) Source checking is not independent reproduction. |
| KimiaNet on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: KimiaNetTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.410 ±0.08 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.08 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(KimiaNet) Source checking is not independent reproduction. |
| Phikon on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: PhikonTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.372 ±0.06 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.06 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(Phikon) Source checking is not independent reproduction. |
| PLIP on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: PLIPTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.392 ±0.09 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.09 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(PLIP) Source checking is not independent reproduction. |
| Remedis on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: RemedisTask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.451 ±0.06 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.06 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(Remedis) Source checking is not independent reproduction. |
| ResNet50 on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: ResNet50Task: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.389 ±0.07 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.07 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(ResNet50) Source checking is not independent reproduction. |
| UNI on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma Configuration: UNITask: HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinomaDataset subset: HEST-Benchmark PAAD (HEST-Benchmark split) Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.424 ±0.06 pearson_r Unit: correlation · Direction: higher | Uncertainty: type: standard deviation; value: 0.06 Scored: Not reported · Eligible: Not reported | source checkedHEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(PAAD), column(UNI) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of HEST-Benchmark PAAD that HEST-Benchmark evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis No field-specific location recorded Version: Version pinned by URL and artifact SHA256 when available | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name HEST-Benchmark PAAD (HEST-Benchmark split) Context-only references | HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis No field-specific location recorded Version: Version pinned by URL and artifact SHA256 when available | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Original source · Version pinned by URL and artifact SHA256 when available
Technical metadata and extraction receipts
Stable ID: hest-dataset-hest-benchmark-paad
- areas
- cells-tissues
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: Ciga on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: CONCH on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: CTransPath on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: GigaPath on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: KimiaNet on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: Phikon on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: PLIP on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: Remedis on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: ResNet50 on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma
- dataset: UNI on HEST-Benchmark PAAD: Gene expression prediction from histology, Pancreatic adenocarcinoma