RAbD, 55 antibody-antigen complexes (ProteinBench split)
The split of RAbD, 55 antibody-antigen complexes that ProteinBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-134cd1815de8 · 84 evaluations · 84 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AbDPO on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Configuration: AbDPOTask: ProteinBench AB-ACCURACY-RMSD: Accuracy RMSDDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.79 ± 3.01 rmsd Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 3.01 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Accuracy RMSD ↓) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Configuration: AbDPOTask: ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-scoreDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.35 ± 0.06 tm-score Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 0.06 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Accuracy TM-score ↑) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Configuration: AbDPOTask: ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding EnergyDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 116.06 ± 186.06 binding-energy Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 186.06 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Functionality Binding Energy ↓) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Configuration: AbDPOTask: ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-innerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.14 ± 1.84 clashes-inner Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 1.84 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality Clashes-inner ↓) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Configuration: AbDPOTask: ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0 .10 ± 0.24 clashes-outer Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.24 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality Clashes-outer ↓) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Configuration: AbDPOTask: ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-scoreDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 1.33 ± 2.31 cn-score Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 2.31 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality CN-score ↑) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Configuration: AbDPOTask: ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSDDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.79 ± 3.25 scrmsd Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 3.25 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality scRMSD ↓) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Configuration: AbDPOTask: ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNatDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| -1.99 ± 0.34 seqnat Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 0.34 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality SeqNat ↑) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Configuration: AbDPOTask: ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total EnergyDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 270.12 ± 217.45 total-energy Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 217.45 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality Total Energy ↓) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-inner Configuration: AbDPOTask: ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-innerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0 .60 seqsim-inner Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Specificity SeqSim-inner ↑) Source checking is not independent reproduction. |
| AbDPO on ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer Configuration: AbDPOTask: ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0 .38 seqsim-outer Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Specificity SeqSim-outer ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Configuration: AbDPO++Task: ProteinBench AB-ACCURACY-RMSD: Accuracy RMSDDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.48 ± 0.59 rmsd Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.59 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Accuracy RMSD ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Configuration: AbDPO++Task: ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-scoreDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.35 ± 0.06 tm-score Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 0.06 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Accuracy TM-score ↑) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Configuration: AbDPO++Task: ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding EnergyDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2 23.73 ± 281.7 binding-energy Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 281.7 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Functionality Binding Energy ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Configuration: AbDPO++Task: ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-innerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 1.66 ± 1.28 clashes-inner Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 1.28 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality Clashes-inner ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Configuration: AbDPO++Task: ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.08 ± 0.20 clashes-outer Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.20 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality Clashes-outer ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Configuration: AbDPO++Task: ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-scoreDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.34 ± 3.20 cn-score Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 3.20 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality CN-score ↑) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Configuration: AbDPO++Task: ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSDDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.50 ± 0.75 scrmsd Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.75 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality scRMSD ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Configuration: AbDPO++Task: ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNatDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| - 1.78 ± 0.43 seqnat Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 0.43 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality SeqNat ↑) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Configuration: AbDPO++Task: ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total EnergyDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3 38.14 ± 266.48 total-energy Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 266.48 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality Total Energy ↓) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-inner Configuration: AbDPO++Task: ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-innerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.54 seqsim-inner Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Specificity SeqSim-inner ↑) Source checking is not independent reproduction. |
| AbDPO++ on ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer Configuration: AbDPO++Task: ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outerDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.39 seqsim-outer Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Specificity SeqSim-outer ↓) Source checking is not independent reproduction. |
| DiffAb on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Configuration: DiffAbTask: ProteinBench AB-ACCURACY-RMSD: Accuracy RMSDDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 2.53 ± 0.60 rmsd Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.60 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(DiffAb), column(Accuracy RMSD ↓) Source checking is not independent reproduction. |
| DiffAb on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Configuration: DiffAbTask: ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-scoreDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.37 ± 0.06 tm-score Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 0.06 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(DiffAb), column(Accuracy TM-score ↑) Source checking is not independent reproduction. |
| DiffAb on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Configuration: DiffAbTask: ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding EnergyDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 489.42 ± 499.76 binding-energy Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 499.76 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(DiffAb), column(Functionality Binding Energy ↓) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of RAbD, 55 antibody-antigen complexes that ProteinBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name RAbD, 55 antibody-antigen complexes (ProteinBench split) Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-dataset-rabd-55-antibody-antigen-complexes
- areas
- proteins-complexes
- missing metadata
- version: unreported; url: unextracted
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