MFASS v2 test: matched canonical annotation coverage
8,297 of 8,324 held-out variants scored in every configuration (314 positives, 460 exon groups). The same 27 rows are excluded: 23 assembly-orientation mismatches and four outside the selected canonical transcript spans. Missing scores are not zero or negative predictions.
Evaluation results
4 evaluations · 16 results. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
Source checking is not independent reproduction. Release 2026-09-25-d40cee0abe73.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
70 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.exclusion_counts.assembly_orientation 23 Context-only references | MFASS matched canonical annotation v1: exclusion-verification.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 4be7a98e2553fa2378c29625b13eb3e8ac2e58fb | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.assembly_orientation 23 Context-only references | MFASS matched canonical annotation v1: manifest-v1.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.assembly_orientation 23 Context-only references | MFASS matched canonical annotation v1: provenance.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.assembly_orientation 23 Context-only references | MFASS matched canonical annotation v1: report.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.assembly_orientation 23 Context-only references | MFASS matched canonical annotation v1: verification.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.canonical_transcript_span 4 Context-only references | MFASS matched canonical annotation v1: exclusion-verification.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 4be7a98e2553fa2378c29625b13eb3e8ac2e58fb | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.canonical_transcript_span 4 Context-only references | MFASS matched canonical annotation v1: manifest-v1.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.canonical_transcript_span 4 Context-only references | MFASS matched canonical annotation v1: provenance.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.canonical_transcript_span 4 Context-only references | MFASS matched canonical annotation v1: report.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.exclusion_counts.canonical_transcript_span 4 Context-only references | MFASS matched canonical annotation v1: verification.json report.json: coverage and contrasts; computational exclusion verification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 093fd1ae198c80ce34408d84d6543bca4fc538f2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-25-d40cee0abe73 · Record review: source checked
5 source records and release history
- MFASS matched canonical annotation v1: report.json · Original source · 093fd1ae198c80ce34408d84d6543bca4fc538f2
- MFASS matched canonical annotation v1: manifest-v1.json · Original source · 093fd1ae198c80ce34408d84d6543bca4fc538f2
- MFASS matched canonical annotation v1: verification.json · Original source · 093fd1ae198c80ce34408d84d6543bca4fc538f2
- MFASS matched canonical annotation v1: provenance.json · Original source · 093fd1ae198c80ce34408d84d6543bca4fc538f2
- MFASS matched canonical annotation v1: exclusion-verification.json · Original source · 4be7a98e2553fa2378c29625b13eb3e8ac2e58fb
Technical metadata and extraction receipts
Stable ID: rewire-mfass-matched-v1-dataset
- areas
- dna-genomes
- version
- split-v2-matched-annotation-v1
- test count
- 8324
- scored count
- 8297
- missing count
- 27
- positive count
- 314
- independent groups
- 460
- scored ids sha256
- 89b5568e2d819b892ba5e6db680d85e41224d6a69fec4b09a85c5075cade39d8
- exclusion counts
- assembly orientation: 23; canonical transcript span: 4
- exclusion issue url
- https://github.com/KosuriLab/MFASS/issues/1
- source locator
- report.json: coverage and contrasts; computational exclusion verification
- limitations
- 8,297 of 8,324 held-out variants scored in every configuration (314 positives, 460 exon groups). The same 27 rows are excluded: 23 assembly-orientation mismatches and four outside the selected canonical transcript spans. Missing scores are not zero or negative predictions.; Exploratory comparison: prior results were known. Paired contrast intervals are unadjusted and do not establish a universal model ranking.; Pangolin uses the recorded per-gene masking patch; these are exact configurations, not unqualified upstream model scores.; Precision at 100 is sensitive to tied-score ordering, especially P1. Numerical source checking is automated, not human review or independent reproduction.; Assembly-orientation issue reported at https://github.com/KosuriLab/MFASS/issues/1. Original v1 outputs remain unchanged; corrections require a new version.
Related records
- dataset subset: Pangolin 1.0.2 + per-gene masking patch · mask False (P0) on MFASS matched annotation
- dataset subset: Pangolin 1.0.2 + per-gene masking patch · mask True (P1) on MFASS matched annotation
- dataset subset: SpliceAI 1.3.1 · mask 0 (S0) on MFASS matched annotation
- dataset subset: SpliceAI 1.3.1 · mask 1 (S1) on MFASS matched annotation