CNN (Jores et al.): promoter strength, maize protoplasts on PGB promoter strength maize protoplasts: Z. mays: promoter strength prediction
PGB promoter strength evaluation of CNN (Jores et al.): promoter strength, maize protoplasts on promoter strength prediction, scored with R².
Evaluation results
1 evaluation · 1 metric rows. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CNN (Jores et al.): promoter strength, maize protoplasts | Protocol: PGB promoter strength maize protoplasts: Z. mays: promoter strength prediction Dataset subset: promoter strength test sequences: maize protoplasts: Z. mays (PGB promoter strength split) | 0.69 r2 coefficient of determination · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and source170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here. Aggregation: Not reported AgroNT Figure 3e source table · Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) |
Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.
Evaluation procedure
170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here.
- Configuration
- CNN (Jores et al.): promoter strength, maize protoplasts
- Protocol
- PGB promoter strength maize protoplasts: Z. mays: promoter strength prediction
- Dataset subset
- promoter strength test sequences: maize protoplasts: Z. mays (PGB promoter strength split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- agront-2024-fig3e-task-maize-protoplasts-z-mays
- metric implementation
- R²
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- R²
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
28 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Task-specific CNN from the cited original study Context-only references | AgroNT Figure 3e source table Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.adaptation Task-specific CNN from the cited original study Context-only references | AgroNT: published methods and Figure 3 Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation R² Context-only references | AgroNT Figure 3e source table Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation R² Context-only references | AgroNT: published methods and Figure 3 Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id agront-2024-fig3e-task-maize-protoplasts-z-mays Context-only references | AgroNT Figure 3e source table Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id agront-2024-fig3e-task-maize-protoplasts-z-mays Context-only references | AgroNT: published methods and Figure 3 Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | AgroNT Figure 3e source table Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | AgroNT: published methods and Figure 3 Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol 170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here. Context-only references | AgroNT Figure 3e source table Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol 170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here. Context-only references | AgroNT: published methods and Figure 3 Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
2 source records and release history
- AgroNT Figure 3e source table · Original source · 78ec8156c2ffb3e5475277fdb7eb603294224e53
- AgroNT: published methods and Figure 3 · Original source · Version of record, 2024-07-09; retrieved XML snapshot
Technical metadata and extraction receipts
Stable ID: agront-2024-fig3e-evaluation-cnn-jores-et-al-promoter-strength-maize-protoplasts-maize-protoplasts-z-mays
- areas
- genomics
- tasks
- promoter strength prediction
- origin
- author_reported
- protocol
- 170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here.
- comparison
- protocol id: agront-2024-fig3e-task-maize-protoplasts-z-mays; metric implementation: R²
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Figures/Fig3_panele.txt, line 10 (data row 9), column R2; Species=Z. mays; Model=Maize model; Type=CNN (Jores et al.)
- published score reproduction
- false
- suite complete
- false
- adaptation
- Task-specific CNN from the cited original study
- sequence length bp
- 170
Related records
- benchmark: PGB promoter strength maize protoplasts: Z. mays: promoter strength prediction
- model: CNN (Jores et al.): promoter strength, maize protoplasts
- dataset: promoter strength test sequences: maize protoplasts: Z. mays (PGB promoter strength split)
- evaluation: CNN (Jores et al.): promoter strength, maize protoplasts · PGB promoter strength maize protoplasts: Z. mays · R²