AlphaGenome Enformer-split model with 128 bp Enformer head: TF ChIP-seq track prediction at 128 bp
Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version.
Evaluation procedure
Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version.
- Model
- AlphaGenome Enformer-split model with 128 bp Enformer head
- Benchmark
- TF ChIP-seq track prediction at 128 bp (AlphaGenome paper)
- Dataset
- TF ChIP-seq track prediction at 128 bp: evaluated data subset
- origin
- Author-reported evaluation
- configuration
- AlphaGenome Enformer-split model with 128 bp Enformer head
- protocol id
- alphagenome-2026-t3-protocol-22
- dataset version
- Not reported
- split
- Exclude test intervals whose full AlphaGenome input overlaps Enformer training intervals.
- population
- Enformer/Basenji2 target tracks at 128-bp resolution, with matched Enformer training sequence intervals.
- inputs
- Not reported
- adaptation
- AlphaGenome Enformer-split model with 128 bp Enformer head
- metric implementation
- Not reported
- aggregation
- Pearson correlation summarized over the relevant modality tracks.
- budget
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-a757f4af4277 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AlphaGenome Enformer-split model with 128 bp Enformer head: TF ChIP-seq track prediction at 128 bp Model: AlphaGenome Enformer-split model with 128 bp Enformer head · Benchmark: TF ChIP-seq track prediction at 128 bp (AlphaGenome paper) · Dataset: TF ChIP-seq track prediction at 128 bp: evaluated data subset Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.58 pearsonr Unit: correlation · Direction: higher Aggregation: Pearson correlation summarized over the relevant modality tracks. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!K38; 'Suppl Table 3 Track performance'!K39 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
63 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation AlphaGenome Enformer-split model with 128 bp Enformer head Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.adaptation AlphaGenome Enformer-split model with 128 bp Enformer head Context-only references | AlphaGenome Nature 2026 supplementary methods No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| attributes.comparison.adaptation AlphaGenome Enformer-split model with 128 bp Enformer head Context-only references | AlphaGenome Nature 2026 supplementary comparison tables No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| attributes.comparison.aggregation Pearson correlation summarized over the relevant modality tracks. Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.aggregation Pearson correlation summarized over the relevant modality tracks. Context-only references | AlphaGenome Nature 2026 supplementary methods No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| attributes.comparison.aggregation Pearson correlation summarized over the relevant modality tracks. Context-only references | AlphaGenome Nature 2026 supplementary comparison tables No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| attributes.comparison.budget No value recorded Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.budget No value recorded Context-only references | AlphaGenome Nature 2026 supplementary methods No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| attributes.comparison.budget No value recorded Context-only references | AlphaGenome Nature 2026 supplementary comparison tables No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| attributes.comparison.dataset_version No value recorded Context-only references | alphagenome: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
Release 2026-09-17-a757f4af4277 · Record review: needs review
- AlphaGenome Nature 2026 supplementary comparison tables · Original source · Nature version of record, 28 January 2026
- AlphaGenome Nature 2026 supplementary methods · Original source · Supplement to Nature version of record, 28 January 2026; content hash pinned
- alphagenome: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: alphagenome-2026-evaluation-1e37a115e8ecb3ba
- areas
- dna-genomes
- origin
- author_reported
- protocol
- Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version.
- version
- AlphaGenome Enformer-split model with 128 bp Enformer head
- source evaluation index
- 22
- source table
- 3
- comparison
- protocol id: alphagenome-2026-t3-protocol-22; dataset version: Not reported; split: Exclude test intervals whose full AlphaGenome input overlaps Enformer training intervals.; population: Enformer/Basenji2 target tracks at 128-bp resolution, with matched Enformer training sequence intervals.; inputs: Not reported; adaptation: AlphaGenome Enformer-split model with 128 bp Enformer head; metric implementation: Not reported; aggregation: Pearson correlation summarized over the relevant modality tracks.; budget: Not reported
- context
- allowed inputs: Full AlphaGenome reference-DNA context with the Enformer-specific head; table separately compares human-fine-tuned and not-fine-tuned Enformer models.; limitations: Matched targets do not imply identical input context. Enformer fine-tuning variants remain separate comparator rows, not separate independent AlphaGenome experiments.
- missing metadata
- dataset version: unextracted; exact input manifest: unextracted; inference budget: unreported; scoring failures: unreported
Related records
- model: AlphaGenome Enformer-split model with 128 bp Enformer head
- benchmark: TF ChIP-seq track prediction at 128 bp (AlphaGenome paper)
- dataset: TF ChIP-seq track prediction at 128 bp: evaluated data subset
- evaluation: AlphaGenome Enformer-split model with 128 bp Enformer head: TF ChIP-seq track prediction at 128 bp, pearsonr