Evaluation

LSTM on BEACON MRL: Mean ribosome loading prediction

BEACON harness evaluation of LSTM on Mean ribosome loading prediction, scored with R2.

Methods and reproduction

BEACON harness evaluation of LSTM on Mean ribosome loading prediction, scored with R2.

task: BEACON MRL: Mean ribosome loading prediction
method: LSTM
dataset subset: Optimus (BEACON split)
Split: 76,319/7,600/7,600
Adaptation: Naive supervised model trained from scratch by the BEACON authors
Scoring implementation: R2

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: BEACON MRL: Mean ribosome loading prediction

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evaluation procedure

BEACON harness, fixed downstream head per task. Train/validation/test 76,319/7,600/7,600; dataset Optimus.

Method: LSTM
Task: BEACON MRL: Mean ribosome loading prediction
Dataset subset: Optimus (BEACON split)

origin: Author-reported evaluation
configuration: Not reported
protocol id: beacon-task-mrl
split: 76,319/7,600/7,600
adaptation: Naive supervised model trained from scratch by the BEACON authors
metric implementation: R2

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Evaluation results

Release 2026-09-17-1a18ca2c038a · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
LSTM on BEACON MRL: Mean ribosome loading prediction Method: LSTMTask: BEACON MRL: Mean ribosome loading predictionDataset subset: Optimus (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 76,319/7,600/7,600; dataset Optimus. Author-reported evaluation · Evaluation metadata: source checked
83.94(0.08)% r2 Unit: percent · Direction: higher	Uncertainty: type: standard deviation; value: 0.08 Scored: Not reported · Eligible: Not reported	source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(MRL) Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

12 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-1a18ca2c038a
Property and statement	Original source and location	Review and provenance
attributes.comparison.adaptation Naive supervised model trained from scratch by the BEACON authors Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.metric_implementation R2 Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.protocol_id beacon-task-mrl Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.split 76,319/7,600/7,600 Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.origin author_reported Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.origin` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.protocol BEACON harness, fixed downstream head per task. Train/validation/test 76,319/7,600/7,600; dataset Optimus. Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.protocol` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.source_locator Table3,p.8,row(LSTM),column(MRL) Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.source_locator` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
description BEACON harness evaluation of LSTM on Mean ribosome loading prediction, scored with R2. Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `description` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Relationship: benchmark beacon-task-mrl Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `links:benchmark:beacon-task-mrl` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Relationship: dataset beacon-dataset-optimus Context-only references	BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Original source ↗ Table3,p.8,row(LSTM),column(MRL) Version: v2, 12 December 2024 Retrieved: 2026-09-18	not individually reviewed No individual claim review recorded author reported Audit details Field: `links:dataset:beacon-dataset-optimus` Source artifact SHA-256: `1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-09-17-1a18ca2c038a · Record review: source checked

1 source records and release history

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024

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Technical metadata and extraction receipts

Stable ID: beacon-evaluation-lstm-mrl

areas: rna-transcriptomes
tasks: Mean ribosome loading prediction
origin: author_reported
protocol: BEACON harness, fixed downstream head per task. Train/validation/test 76,319/7,600/7,600; dataset Optimus.
comparison: protocol id: beacon-task-mrl; split: 76,319/7,600/7,600; adaptation: Naive supervised model trained from scratch by the BEACON authors; metric implementation: R2
missing metadata: checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
source locator: Table3,p.8,row(LSTM),column(MRL)

Related records

benchmark: BEACON MRL: Mean ribosome loading prediction
model: LSTM
dataset: Optimus (BEACON split)
evaluation: LSTM · BEACON MRL · R2

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