ResNet-LM on BEND VARIANT-EXPRESSION: Noncoding variant effects on expression
BEND evaluation of ResNet-LM on Noncoding variant effects on expression, scored with AUROC.
Methods and reproduction
BEND evaluation of ResNet-LM on Noncoding variant effects on expression, scored with AUROC.
- task
- BEND VARIANT-EXPRESSION: Noncoding variant effects on expression
- method
- ResNet-LM
- dataset subset
- DeepSEA expression variants (BEND split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- AUROC
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1.
- Method
- ResNet-LM
- Task
- BEND VARIANT-EXPRESSION: Noncoding variant effects on expression
- Dataset subset
- DeepSEA expression variants (BEND split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- bend-task-variant-expression
- metric implementation
- AUROC
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ResNet-LM on BEND VARIANT-EXPRESSION: Noncoding variant effects on expression Method: ResNet-LMTask: BEND VARIANT-EXPRESSION: Noncoding variant effects on expressionDataset subset: DeepSEA expression variants (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.55 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation AUROC Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id bend-task-variant-expression Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description BEND evaluation of ResNet-LM on Noncoding variant effects on expression, scored with AUROC. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark bend-task-variant-expression Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset bend-dataset-deepsea-expression-variants Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model bend-method-resnet-lm Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name ResNet-LM on BEND VARIANT-EXPRESSION: Noncoding variant effects on expression Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(ResNet-LM), column(Noncoding variant effects on expression) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: bend-evaluation-resnet-lm-variant-expression
- areas
- dna-genomes
- tasks
- Noncoding variant effects on expression
- origin
- author_reported
- protocol
- A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1.
- comparison
- protocol id: bend-task-variant-expression; metric implementation: AUROC
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 3, row(ResNet-LM), column(Noncoding variant effects on expression)
Related records
- benchmark: BEND VARIANT-EXPRESSION: Noncoding variant effects on expression
- model: ResNet-LM
- dataset: DeepSEA expression variants (BEND split)
- evaluation: ResNet-LM · BEND VARIANT-EXPRESSION · AUROC