FFN contrastive on MIST CANOPUS retrieval Top 50: MIST CANOPUS fingerprint retrieval: Top 50
MIST CANOPUS retrieval evaluation of FFN contrastive on MIST CANOPUS fingerprint retrieval: Top 50, scored with Retrieval accuracy@50.
Evaluation results
1 evaluation · 1 metric rows. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: FFN contrastive | Protocol: MIST CANOPUS retrieval Top 50: MIST CANOPUS fingerprint retrieval: Top 50 Dataset subset: MIST CANOPUS benchmark test set used in DreaMS Extended Data Table 1 (MIST CANOPUS retrieval split) | 75.062% accuracy_at_50 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Evaluation origin not reported · source checkedMethods, coverage and sourceFFN contrastive on MIST CANOPUS retrieval Top 50: MIST CANOPUS fingerprint retrieval: Top 50 MIST CANOPUS PubChem candidate retrieval; candidate positives share true molecule InChIKey first14 characters, negatives share molecular formula; rank cosine similarity of predicted and candidate fingerprints; accuracy@k is fraction of spectra with positive candidate in top k, printed as percent. Full test set named in Extended Data Table 1; exact split version/hash unextracted; 8000 spectra/7000 molecules describes total benchmark, not confirmed test denominator. Aggregation: Not reported dreams: Journal full-text XML · Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 |
Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.
Evaluation procedure
MIST CANOPUS PubChem candidate retrieval; candidate positives share true molecule InChIKey first14 characters, negatives share molecular formula; rank cosine similarity of predicted and candidate fingerprints; accuracy@k is fraction of spectra with positive candidate in top k, printed as percent. Full test set named in Extended Data Table 1; exact split version/hash unextracted; 8000 spectra/7000 molecules describes total benchmark, not confirmed test denominator.
- Configuration
- FFN contrastive
- Protocol
- MIST CANOPUS retrieval Top 50: MIST CANOPUS fingerprint retrieval: Top 50
- Dataset subset
- MIST CANOPUS benchmark test set used in DreaMS Extended Data Table 1 (MIST CANOPUS retrieval split)
- origin
- Evaluation origin not reported
- configuration
- Not reported
- protocol id
- dreams-mist-retrieval-task-top-50
- metric implementation
- Retrieval accuracy@50
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Retrieval accuracy@50
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
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Evidence table
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Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
15 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Supervised fingerprint prediction; contrastive comparators use additional PubChem candidates. Model-specific inputs and training differ. Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.metric_implementation Retrieval accuracy@50 Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.protocol_id dreams-mist-retrieval-task-top-50 Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.evaluation_group_id dreams-mist-retrieval-method-ffn-contrastive-dreams-mist-retrieval-dataset-mist-canopus-benchmark-test-set-used-in-dreams-extended-data-table-1-evaluation-setup Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.evidence_overlap Complete Extended Data Table 1 from one paper. Comparator execution provenance is unresolved; do not treat quoted comparisons as additional independent experiments. Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.origin unreported Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | missing or unspecified No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.protocol MIST CANOPUS PubChem candidate retrieval; candidate positives share true molecule InChIKey first14 characters, negatives share molecular formula; rank cosine similarity of predicted and candidate fingerprints; accuracy@k is fraction of spectra with positive candidate in top k, printed as percent. Full test set named in Extended Data Table 1; exact split version/hash unextracted; 8000 spectra/7000 molecules describes total benchmark, not confirmed test denominator. Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.published_score_reproduction false Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.source_locator Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.suite_complete false Context-only references | dreams: Journal full-text XML Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50 Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- dreams: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: dreams-mist-retrieval-evaluation-ffn-contrastive-top-50
- areas
- metabolomics
- tasks
- MIST CANOPUS fingerprint retrieval: Top 50
- origin
- unreported
- protocol
- MIST CANOPUS PubChem candidate retrieval; candidate positives share true molecule InChIKey first14 characters, negatives share molecular formula; rank cosine similarity of predicted and candidate fingerprints; accuracy@k is fraction of spectra with positive candidate in top k, printed as percent. Full test set named in Extended Data Table 1; exact split version/hash unextracted; 8000 spectra/7000 molecules describes total benchmark, not confirmed test denominator.
- comparison
- protocol id: dreams-mist-retrieval-task-top-50; metric implementation: Retrieval accuracy@50
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Extended Data Table 1 (XML Tab1), row FFN contrastive, column Top 50
- adaptation
- Supervised fingerprint prediction; contrastive comparators use additional PubChem candidates. Model-specific inputs and training differ.
- evidence overlap
- Complete Extended Data Table 1 from one paper. Comparator execution provenance is unresolved; do not treat quoted comparisons as additional independent experiments.
- published score reproduction
- false
- suite complete
- false
- evaluation group id
- dreams-mist-retrieval-method-ffn-contrastive-dreams-mist-retrieval-dataset-mist-canopus-benchmark-test-set-used-in-dreams-extended-data-table-1-evaluation-setup