DNABERT-2 on GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME2: Epigenetic marks prediction, dataset H3K4me2
GUE evaluation of DNABERT-2 on Epigenetic marks prediction, dataset H3K4me2, scored with MCC.
Methods and reproduction
GUE evaluation of DNABERT-2 on Epigenetic marks prediction, dataset H3K4me2, scored with MCC.
- task
- GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME2: Epigenetic marks prediction, dataset H3K4me2
- configuration
- DNABERT-2
- dataset subset
- GUE Epigenetic marks prediction, H3K4me2 (GUE split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- MCC
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.
- Configuration
- DNABERT-2
- Task
- GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME2: Epigenetic marks prediction, dataset H3K4me2
- Dataset subset
- GUE Epigenetic marks prediction, H3K4me2 (GUE split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- gue-task-epigenetic-marks-prediction-h3k4me2
- metric implementation
- MCC
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2 on GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME2: Epigenetic marks prediction, dataset H3K4me2 Configuration: DNABERT-2Task: GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME2: Epigenetic marks prediction, dataset H3K4me2Dataset subset: GUE Epigenetic marks prediction, H3K4me2 (GUE split) Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.13% mcc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation MCC Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id gue-task-epigenetic-marks-prediction-h3k4me2 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description GUE evaluation of DNABERT-2 on Epigenetic marks prediction, dataset H3K4me2, scored with MCC. Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark gue-task-epigenetic-marks-prediction-h3k4me2 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset gue-dataset-gue-epigenetic-marks-prediction-h3k4me2 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model gue-method-dnabert-2 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name DNABERT-2 on GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME2: Epigenetic marks prediction, dataset H3K4me2 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: gue-evaluation-dnabert-2-epigenetic-marks-prediction-h3k4me2
- areas
- dna-genomes
- tasks
- Epigenetic marks prediction, dataset H3K4me2
- origin
- author_reported
- protocol
- Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.
- comparison
- protocol id: gue-task-epigenetic-marks-prediction-h3k4me2; metric implementation: MCC
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 6, row(DNABERT-2), column(Epigenetic marks prediction H3K4me2)