Enformer on NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot
NABench evaluation of Enformer on Fitness prediction on enhancer assays, zero-shot, scored with Spearman ρ.
Methods and reproduction
NABench evaluation of Enformer on Fitness prediction on enhancer assays, zero-shot, scored with Spearman ρ.
- task
- NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot
- configuration
- Enformer
- dataset subset
- NABench enhancer assays (NABench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Spearman ρ
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Scored zero-shot across the NABench enhancer assays.
- Configuration
- Enformer
- Task
- NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot
- Dataset subset
- NABench enhancer assays (NABench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- nabench-task-zs-corr-enhancer
- metric implementation
- Spearman ρ
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Enformer on NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot Configuration: EnformerTask: NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shotDataset subset: NABench enhancer assays (NABench split) Scored zero-shot across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.216 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Enformer), column(enhancer) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Spearman ρ Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id nabench-task-zs-corr-enhancer Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Scored zero-shot across the NABench enhancer assays. Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 7, row(Enformer), column(enhancer) Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description NABench evaluation of Enformer on Fitness prediction on enhancer assays, zero-shot, scored with Spearman ρ. Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark nabench-task-zs-corr-enhancer Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset nabench-dataset-nabench-enhancer-assays Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model nabench-method-enformer Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Enformer on NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 7, row(Enformer), column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-evaluation-enformer-zs-corr-enhancer
- areas
- rna-transcriptomes
- tasks
- Fitness prediction on enhancer assays, zero-shot
- origin
- author_reported
- protocol
- Scored zero-shot across the NABench enhancer assays.
- comparison
- protocol id: nabench-task-zs-corr-enhancer; metric implementation: Spearman ρ
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 7, row(Enformer), column(enhancer)