GENA-LM-large on NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ
NABench evaluation of GENA-LM-large on Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ, scored with Few-shot Spearman ρ.
Methods and reproduction
NABench evaluation of GENA-LM-large on Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ, scored with Few-shot Spearman ρ.
- task
- NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ
- configuration
- GENA-LM-large
- dataset subset
- NABench deep mutational scanning assays (NABench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Few-shot Spearman ρ
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Aggregated by the NABench authors across NABench deep mutational scanning assays.
- Configuration
- GENA-LM-large
- Task
- NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ
- Dataset subset
- NABench deep mutational scanning assays (NABench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- nabench-task-dms-fs
- metric implementation
- Few-shot Spearman ρ
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| GENA-LM-large on NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Configuration: GENA-LM-largeTask: NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρDataset subset: NABench deep mutational scanning assays (NABench split) Aggregated by the NABench authors across NABench deep mutational scanning assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.151 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Few-shot Spearman ρ Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id nabench-task-dms-fs Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Aggregated by the NABench authors across NABench deep mutational scanning assays. Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description NABench evaluation of GENA-LM-large on Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ, scored with Few-shot Spearman ρ. Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark nabench-task-dms-fs Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset nabench-dataset-nabench-deep-mutational-scanning-assays Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model nabench-method-gena-lm-large Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name GENA-LM-large on NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-evaluation-gena-lm-large-dms-fs
- areas
- rna-transcriptomes
- tasks
- Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ
- origin
- author_reported
- protocol
- Aggregated by the NABench authors across NABench deep mutational scanning assays.
- comparison
- protocol id: nabench-task-dms-fs; metric implementation: Few-shot Spearman ρ
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 6, row(GENA-LM-large), column(Few-shot Spearman ρ)