Evaluation

Alignment: ProteinNet CASP12

CASP12 test, 30% sequence-identity partition; medium/long-range contacts

Evaluation procedure

CASP12 test, 30% sequence-identity partition; medium/long-range contacts

Configuration: Alignment
Task: TAPE Contact Prediction
Dataset: ProteinNet CASP12

origin: Author-reported evaluation
configuration: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head
protocol id: discovery-benchmark-tape-contact-prediction
dataset version: Not reported
split: CASP12 test, 30% sequence-identity partition; medium/long-range contacts
subset: Not reported
population: count: 40; unit: proteins; top L/5 pairs per protein
aggregation: Not reported
inputs: Not reported
adaptation: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head
budget: Not reported
metric implementation: Not reported

Metadata review: needs review. Unreported conditions prevent automatic comparisons.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
Alignment: ProteinNet CASP12 Configuration: AlignmentTask: TAPE Contact PredictionDataset: ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Author-reported evaluation · Evaluation metadata: needs review
0.64 precision at L/5 Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

20 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
attributes.comparison.adaptation Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.aggregation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.budget No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.dataset_version No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.inputs No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.metric_implementation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.count 40 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.count` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.unit proteins; top L/5 pairs per protein Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.unit` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.protocol_id discovery-benchmark-tape-contact-prediction Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.split CASP12 test, 30% sequence-identity partition; medium/long-range contacts Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

Release 2026-09-17-d277315f7d76 · Record review: needs review

tape primary benchmark evidence · Original source · 1906.08230v1

Download this release

Technical metadata and extraction receipts

Stable ID: paper-evaluation-2876cc3a470520ec1e

areas: protein-function
origin: author_reported
protocol: CASP12 test, 30% sequence-identity partition; medium/long-range contacts
version: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head
comparison: protocol id: discovery-benchmark-tape-contact-prediction; dataset version: Not reported; split: CASP12 test, 30% sequence-identity partition; medium/long-range contacts; subset: Not reported; population: count: 40; unit: proteins; top L/5 pairs per protein; aggregation: Not reported; inputs: Not reported; adaptation: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head; budget: Not reported; metric implementation: Not reported
source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction
missing metadata: checkpoint revision: unextracted; budget: unreported; split manifest: unextracted

Related records

model: Alignment
benchmark: TAPE Contact Prediction
dataset: ProteinNet CASP12
evaluation: Alignment: precision at L/5 on ProteinNet CASP12

Suggest a correction