70ProPred: E. coli sigma70 independent promoter test
Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
Evaluation procedure
Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- Configuration
- 70ProPred
- Protocol
- E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)
- Dataset
- E. coli sigma70 promoter dataset
- origin
- Result quoted from another source
- configuration
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- protocol id
- paper-protocol-94fa3494d41bcd98d2
- dataset version
- Not reported
- split
- 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- subset
- E. coli sigma70 independent promoter test
- population
- Not reported
- aggregation
- Not reported
- inputs
- Not reported
- adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- budget
- Not reported
- metric implementation
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 4 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| 70ProPred: E. coli sigma70 independent promoter test Configuration: 70ProPredProtocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)Dataset: E. coli sigma70 promoter dataset Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Result quoted from another source · Evaluation metadata: needs review | ||
| 0.74 Accuracy Unit: unitless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row 70ProPred, column Accuracy; XML row7 column2 Source checking is not independent reproduction. |
| 0.51 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row 70ProPred, column MCC; XML row7 column3 Source checking is not independent reproduction. |
| 0.60 Specificity Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row 70ProPred, column Specificity; XML row7 column5 Source checking is not independent reproduction. |
| 0.90 Sensitivity Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row 70ProPred, column Sensitivity; XML row7 column4 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation No value recorded Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget No value recorded Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version No value recorded Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs No value recorded Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation No value recorded Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population No value recorded Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-94fa3494d41bcd98d2 Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset E. coli sigma70 independent promoter test Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1
Technical metadata and extraction receipts
Stable ID: paper-evaluation-308ecb398a9a289e2e
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- origin
- paper_compilation
- protocol
- Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- comparison
- protocol id: paper-protocol-94fa3494d41bcd98d2; dataset version: Not reported; split: 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.; subset: E. coli sigma70 independent promoter test; population: Not reported; aggregation: Not reported; inputs: Not reported; adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label; budget: Not reported; metric implementation: Not reported
- source locator
- Table 3: Accuracy, E. coli sigma70 independent promoter test
- missing metadata
- checkpoint revision: unextracted; budget: unreported; split manifest: unextracted
Related records
- model: 70ProPred
- benchmark: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)
- dataset: E. coli sigma70 promoter dataset
- evaluation: 70ProPred: Accuracy on E. coli sigma70 independent promoter test
- evaluation: 70ProPred: MCC on E. coli sigma70 independent promoter test
- evaluation: 70ProPred: Specificity on E. coli sigma70 independent promoter test
- evaluation: 70ProPred: Sensitivity on E. coli sigma70 independent promoter test