Evaluation

Alignment: Sarkisyan GFP fluorescence

Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent

Evaluation procedure

Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent

Configuration: Alignment
Task: TAPE Fluorescence
Dataset: TAPE Fluorescence source dataset

origin: Author-reported evaluation
configuration: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head
protocol id: discovery-benchmark-tape-fluorescence
dataset version: Not reported
split: Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent
subset: Not reported
population: count: 27217; unit: protein variants
aggregation: Not reported
inputs: Not reported
adaptation: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head
budget: Not reported
metric implementation: Not reported

Metadata review: needs review. Unreported conditions prevent automatic comparisons.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
Alignment: Sarkisyan GFP fluorescence Configuration: AlignmentTask: TAPE FluorescenceDataset: TAPE Fluorescence source dataset Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent Author-reported evaluation · Evaluation metadata: needs review
N/A Spearman's rho Unit: correlation · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

20 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
attributes.comparison.adaptation Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.aggregation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.budget No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.dataset_version No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.inputs No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.metric_implementation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.count 27217 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.count` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.unit protein variants Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.unit` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.protocol_id discovery-benchmark-tape-fluorescence Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.split Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: needs review

tape primary benchmark evidence · Original source · 1906.08230v1

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Technical metadata and extraction receipts

Stable ID: paper-evaluation-549a657f2a762d8616

areas: protein-function
origin: author_reported
protocol: Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent
version: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head
comparison: protocol id: discovery-benchmark-tape-fluorescence; dataset version: Not reported; split: Train/validation at most 3 mutations; test 4–15 mutations from the GFP parent; subset: Not reported; population: count: 27217; unit: protein variants; aggregation: Not reported; inputs: Not reported; adaptation: Task-specific alignment/HMM baseline; original TAPE paper task-specific supervised head; budget: Not reported; metric implementation: Not reported
source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence
missing metadata: checkpoint revision: unextracted; budget: unreported; split manifest: unextracted

Related records

model: Alignment
benchmark: TAPE Fluorescence
dataset: TAPE Fluorescence source dataset
evaluation: Alignment: Spearman's rho on Sarkisyan GFP fluorescence

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