DeepSEA: TF-cell-type binding on held-out chromosomes8and9
Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Evaluation procedure
Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
- Configuration
- DeepSEA
- Protocol
- TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
- Dataset
- genome-wide TF binding sites
- origin
- Independent external evaluation
- configuration
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- protocol id
- paper-protocol-6821afc366eb11d0c6
- dataset version
- Not reported
- split
- DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
- subset
- TF-cell-type binding on held-out chromosomes8and9
- population
- Not reported
- aggregation
- Not reported
- inputs
- Not reported
- adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- budget
- Not reported
- metric implementation
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DeepSEA: TF-cell-type binding on held-out chromosomes8and9 Configuration: DeepSEAProtocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)Dataset: genome-wide TF binding sites Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.2509 AUPR Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DeepSEA, column AUPR; XML row2 column3 Source checking is not independent reproduction. |
| 0.8934 AUROC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DeepSEA, column AUROC; XML row2 column2 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-6821afc366eb11d0c6 Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset TF-cell-type binding on held-out chromosomes8and9 Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-evaluation-86589f014536e31c8a
- areas
- molecular-interactions
- tasks
- transcription-factor DNA binding-site prediction
- origin
- independent_paper
- protocol
- Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- comparison
- protocol id: paper-protocol-6821afc366eb11d0c6; dataset version: Not reported; split: DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.; subset: TF-cell-type binding on held-out chromosomes8and9; population: Not reported; aggregation: Not reported; inputs: Not reported; adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label; budget: Not reported; metric implementation: Not reported
- source locator
- Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9
- missing metadata
- checkpoint revision: unextracted; budget: unreported; split manifest: unextracted
Related records
- model: DeepSEA
- benchmark: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
- dataset: genome-wide TF binding sites
- evaluation: DeepSEA: AUPR on TF-cell-type binding on held-out chromosomes8and9
- evaluation: DeepSEA: AUROC on TF-cell-type binding on held-out chromosomes8and9