ESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation
ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation.
Evaluation procedure
ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation.
- Configuration
- ESM2_AMP_CSE
- Protocol
- Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction)
- Dataset
- Pan_dataset five-fold PPI cross-validation
- origin
- Author-reported evaluation
- configuration
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- protocol id
- paper-protocol-be1c9eab950fb814ec
- dataset version
- Not reported
- split
- Pan_dataset; Table 2 five-fold cross-validation.
- subset
- Pan_dataset five-fold PPI cross-validation
- population
- Not reported
- aggregation
- Not reported
- inputs
- Not reported
- adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- budget
- Not reported
- metric implementation
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 5 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation Configuration: ESM2_AMP_CSEProtocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction)Dataset: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.9937 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column AUC; XML row3 column5 Source checking is not independent reproduction. |
| 0.974 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column Recall; XML row3 column3 Source checking is not independent reproduction. |
| 0.9574 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column MCC; XML row3 column6 Source checking is not independent reproduction. |
| 0.9786 F1 Score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column F1 Score; XML row3 column4 Source checking is not independent reproduction. |
| 0.9787 Accuracy Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column Accuracy; XML row3 column2 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-be1c9eab950fb814ec Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split Pan_dataset; Table 2 five-fold cross-validation. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-evaluation-fd5017907cb06c7c1f
- areas
- molecular-interactions
- tasks
- protein-protein interaction prediction
- origin
- author_reported
- protocol
- ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation.
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- comparison
- protocol id: paper-protocol-be1c9eab950fb814ec; dataset version: Not reported; split: Pan_dataset; Table 2 five-fold cross-validation.; subset: Pan_dataset five-fold PPI cross-validation; population: Not reported; aggregation: Not reported; inputs: Not reported; adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label; budget: Not reported; metric implementation: Not reported
- source locator
- Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation
- missing metadata
- checkpoint revision: unextracted; budget: unreported; split manifest: unextracted
Related records
- model: ESM2_AMP_CSE
- benchmark: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction)
- dataset: Pan_dataset five-fold PPI cross-validation
- evaluation: ESM2_AMP_CSE: AUC on Pan_dataset five-fold PPI cross-validation
- evaluation: ESM2_AMP_CSE: Recall on Pan_dataset five-fold PPI cross-validation
- evaluation: ESM2_AMP_CSE: MCC on Pan_dataset five-fold PPI cross-validation
- evaluation: ESM2_AMP_CSE: F1 Score on Pan_dataset five-fold PPI cross-validation
- evaluation: ESM2_AMP_CSE: Accuracy on Pan_dataset five-fold PPI cross-validation