ProstT5 on PFMBench PDB-BIND: PDBbind
PFMBench evaluation of ProstT5 on PDBbind, scored with Spearman.
Methods and reproduction
PFMBench evaluation of ProstT5 on PDBbind, scored with Spearman.
- task
- PFMBench PDB-BIND: PDBbind
- configuration
- ProstT5
- dataset subset
- PDBbind (PFMBench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Spearman
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.
- Configuration
- ProstT5
- Task
- PFMBench PDB-BIND: PDBbind
- Dataset subset
- PDBbind (PFMBench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- pfmbench-task-pdb-bind
- metric implementation
- Spearman
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ProstT5 on PFMBench PDB-BIND: PDBbind Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.18344 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Spearman Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id pfmbench-task-pdb-bind Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description PFMBench evaluation of ProstT5 on PDBbind, scored with Spearman. Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark pfmbench-task-pdb-bind Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset pfmbench-dataset-pdbbind Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model pfmbench-method-prostt5 Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name ProstT5 on PFMBench PDB-BIND: PDBbind Context-only references | pfmbench primary benchmark evidence Table 3, row(ProstT5 [ 21 ]), column(PDBBind) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- pfmbench primary benchmark evidence · Original source · 2506.14796v1
Technical metadata and extraction receipts
Stable ID: pfmbench-evaluation-prostt5-pdb-bind
- areas
- proteins-complexes
- tasks
- PDBbind
- origin
- author_reported
- protocol
- Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.
- comparison
- protocol id: pfmbench-task-pdb-bind; metric implementation: Spearman
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 3, row(ProstT5 [ 21 ]), column(PDBBind)
Related records
- benchmark: PFMBench PDB-BIND: PDBbind
- model: ProstT5
- dataset: PDBbind (PFMBench split)
- evaluation: ProstT5 · PFMBench PDB-BIND · Spearman