AlphaFold2 on ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median)
ProteinBench evaluation of AlphaFold2 on Accuracy RMSD (median), scored with RMSD (median).
Methods and reproduction
ProteinBench evaluation of AlphaFold2 on Accuracy RMSD (median), scored with RMSD (median).
- task
- ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median)
- configuration
- AlphaFold2
- dataset subset
- CAMEO2022, 183 proteins (ProteinBench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- RMSD (median)
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins.
- Configuration
- AlphaFold2
- Task
- ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median)
- Dataset subset
- CAMEO2022, 183 proteins (ProteinBench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- proteinbench-task-fold-accuracy-rmsd-median
- metric implementation
- RMSD (median)
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AlphaFold2 on ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median) Configuration: AlphaFold2Task: ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 1.64 rmsd_median Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation RMSD (median) Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteinbench-task-fold-accuracy-rmsd-median Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinBench evaluation of AlphaFold2 on Accuracy RMSD (median), scored with RMSD (median). Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteinbench-task-fold-accuracy-rmsd-median Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset proteinbench-dataset-cameo2022-183-proteins Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model proteinbench-method-alphafold2 Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name AlphaFold2 on ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median) Context-only references | proteinbench primary benchmark evidence Table 7, row(AlphaFold2), column(Accuracy RMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-evaluation-alphafold2-fold-accuracy-rmsd-median
- areas
- proteins-complexes
- tasks
- Accuracy RMSD (median)
- origin
- author_reported
- protocol
- Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins.
- comparison
- protocol id: proteinbench-task-fold-accuracy-rmsd-median; metric implementation: RMSD (median)
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 7, row(AlphaFold2), column(Accuracy RMSD ↓)