LM-Design on ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDT
ProteinBench evaluation of LM-Design on De novo backbones based sequence design, length 300 pLDDT, scored with pLDDT.
Methods and reproduction
ProteinBench evaluation of LM-Design on De novo backbones based sequence design, length 300 pLDDT, scored with pLDDT.
- task
- ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDT
- configuration
- LM-Design
- dataset subset
- CASP, CAMEO and de novo backbones (ProteinBench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- pLDDT
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Inverse folding: recover a sequence for a given backbone. Values are the median over repeated runs.
- Configuration
- LM-Design
- Task
- ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDT
- Dataset subset
- CASP, CAMEO and de novo backbones (ProteinBench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- proteinbench-task-if-de-novo-backbones-based-sequence-design-length-300-plddt
- metric implementation
- pLDDT
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| LM-Design on ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDT Configuration: LM-DesignTask: ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDTDataset subset: CASP, CAMEO and de novo backbones (ProteinBench split) Inverse folding: recover a sequence for a given backbone. Values are the median over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 69.86 plddt Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation pLDDT Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteinbench-task-if-de-novo-backbones-based-sequence-design-length-300-plddt Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Inverse folding: recover a sequence for a given backbone. Values are the median over repeated runs. Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinBench evaluation of LM-Design on De novo backbones based sequence design, length 300 pLDDT, scored with pLDDT. Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteinbench-task-if-de-novo-backbones-based-sequence-design-length-300-plddt Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset proteinbench-dataset-casp-cameo-and-de-novo-backbones Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model proteinbench-method-lm-design Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name LM-Design on ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDT Context-only references | proteinbench primary benchmark evidence Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-evaluation-lm-design-if-de-novo-backbones-based-sequence-design-length-300-plddt
- areas
- proteins-complexes
- tasks
- De novo backbones based sequence design, length 300 pLDDT
- origin
- author_reported
- protocol
- Inverse folding: recover a sequence for a given backbone. Values are the median over repeated runs.
- comparison
- protocol id: proteinbench-task-if-de-novo-backbones-based-sequence-design-length-300-plddt; metric implementation: pLDDT
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 2, row(LM-Design), column(De novo backbones based sequence design, length 300 pLDDT ↑)
Related records
- benchmark: ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT: De novo backbones based sequence design, length 300 pLDDT
- model: LM-Design
- dataset: CASP, CAMEO and de novo backbones (ProteinBench split)
- evaluation: LM-Design · ProteinBench IF-DE-NOVO-BACKBONES-BASED-SEQUENCE-DESIGN-LENGTH-300-PLDDT · pLDDT