UniRep evotuned on ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10%
ProteinGym evaluation of UniRep evotuned on Zero-shot substitutions, NDCG@10%, scored with NDCG@10%.
Methods and reproduction
ProteinGym evaluation of UniRep evotuned on Zero-shot substitutions, NDCG@10%, scored with NDCG@10%.
- task
- ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10%
- configuration
- UniRep evotuned
- dataset subset
- ProteinGym substitution DMS assays (ProteinGym split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- NDCG@10%
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes.
- Configuration
- UniRep evotuned
- Task
- ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10%
- Dataset subset
- ProteinGym substitution DMS assays (ProteinGym split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- proteingym-task-zs-sub-ndcg
- metric implementation
- NDCG@10%
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| UniRep evotuned on ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10% Configuration: UniRep evotunedTask: ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10%Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.739 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation NDCG@10% Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteingym-task-zs-sub-ndcg Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinGym evaluation of UniRep evotuned on Zero-shot substitutions, NDCG@10%, scored with NDCG@10%. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteingym-task-zs-sub-ndcg Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset proteingym-dataset-proteingym-substitution-dms-assays Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model proteingym-method-unirep-evotuned Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name UniRep evotuned on ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10% Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-evaluation-unirep-evotuned-zs-sub-ndcg
- areas
- proteins-complexes
- tasks
- Zero-shot substitutions, NDCG@10%
- origin
- author_reported
- protocol
- Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes.
- comparison
- protocol id: proteingym-task-zs-sub-ndcg; metric implementation: NDCG@10%
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 2, row(Hybrid UniRep evotuned), column(Zero-shot substitutions, NDCG@10%)