Strengths supported by sources
- Supports sequence-to-activity and variant-scoring workflows.calico/basenji official source · README.md: opening goals and Changes versus Basset
model · family
Basenji
Basenji predicts regulatory activity along DNA with deep convolutional networks.
At a glance
Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Output form | Regulatory activity in sequence binscalico/basenji official source · README.md: opening goals and Changes versus Basset |
| Model type | Not extracted or verified for this record. |
| Known versions | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
| Weights licence | Not extracted or verified for this record. |
How it works
Schematic of the documented input, computation and output; not an executable configuration.
Read the diagram as text
- DNA sequence
- Convolutional model
- Binned regulatory activity
- Allele comparison
- Predicted regulatory effect
Sequence inputs are processed by convolutional models that output activity in bins. Variant scoring compares predicted activity for alternate sequences in a specified genomic context.
calico/basenji official source · README.md: opening goals and Changes versus BassetBenchmarks and results
Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Strengths and limitations
Limitations and conditions
- Bin resolution, target tracks and sequence context affect what the prediction represents; a project-level record is not a specific trained regulatory model.calico/basenji official source · README.md: opening goals and Changes versus Basset
Profile review details
Primary project documentation or paper inspected for the explanatory claims and cited locations. Reviewed coverage concerns this narrative, not complete metadata, independent reproduction or a performance ranking.
Stable record: discovery-model-basenjiSources and history
Release 2026-09-16-d74d282221a9 · Record review: discovered
- calico/basenji official source · Original source · 06ce5d387e20b47184d05433b3983163c5f923cd
Technical metadata and extraction receipts
Stable ID: discovery-model-basenji
- areas
- genomics
- access
- official_source_linked
- benchmark applicability
- candidate; not evidence of a reported evaluation
- candidate benchmark ids
- None recorded
- entity level
- family
- missing metadata
- checkpoint: unextracted; code licence: unextracted; parameters: unextracted; training cutoff: unextracted; training data: unextracted; version: unextracted; weights licence: unextracted
- reported name
- Basenji
- version
- Not reported