Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
iPromoter-2L
iPromoter-2L as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
ProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Accuracy; XML row8 column2At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
ProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Accuracy; XML row8 column2Evaluations and results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 4 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| iPromoter-2L: E. coli sigma70 independent promoter test Configuration: iPromoter-2LProtocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)Dataset: E. coli sigma70 promoter dataset Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Result quoted from another source · Evaluation metadata: needs review | ||
| 0.64 Accuracy Unit: unitless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Accuracy; XML row8 column2 Source checking is not independent reproduction. |
| 0.37 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column MCC; XML row8 column3 Source checking is not independent reproduction. |
| 0.37 Specificity Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Specificity; XML row8 column5 Source checking is not independent reproduction. |
| 0.94 Sensitivity Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Sensitivity; XML row8 column4 Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-51b2bc3ab7cdc108b9Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | ProkBERT family: genomic language models for microbiome applications Table 3, row iPromoter-2L, column Accuracy; XML row8 column2 Version: PMC10810988.1 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction iPromoter-2L as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | ProkBERT family: genomic language models for microbiome applications Table 3, row iPromoter-2L, column Accuracy; XML row8 column2 Version: PMC10810988.1 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1
Technical metadata and extraction receipts
Stable ID: paper-model-51b2bc3ab7cdc108b9
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-prokbert-2024; source locator: Table 3, row iPromoter-2L, column Accuracy; XML row8 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.