Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
GloVe + Transformer + MLP
GloVe + Transformer + MLP as evaluated in the cited study. Paper-specific predictor; checkpoint not specified
2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 2: Human RNA 2OMe sites, five-fold cross-validation ACCAt a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific predictor; checkpoint not specified
2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 2: Human RNA 2OMe sites, five-fold cross-validation ACCEvaluations and results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 7 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| GloVe + Transformer + MLP: Human RNA 2OMe sites, five-fold cross-validation Configuration: GloVe + Transformer + MLPProtocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction)Dataset: human RNA 2OMe sites 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.832 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 6: Human RNA 2OMe sites, five-fold cross-validation AUC Source checking is not independent reproduction. |
| 0.490 MCC Unit: unitless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Source checking is not independent reproduction. |
| 0.720 F1-score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 3: Human RNA 2OMe sites, five-fold cross-validation F1-score Source checking is not independent reproduction. |
| 0.742 ACC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 2: Human RNA 2OMe sites, five-fold cross-validation ACC Source checking is not independent reproduction. |
| 0.815 AUPR Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 7: Human RNA 2OMe sites, five-fold cross-validation AUPR Source checking is not independent reproduction. |
| 0.787 Precision Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 4: Human RNA 2OMe sites, five-fold cross-validation Precision Source checking is not independent reproduction. |
| 0.664 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checked2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 5: Human RNA 2OMe sites, five-fold cross-validation Recall Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-5b57fab4696276b8a6Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific predictor; checkpoint not specified Individual claims | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 2: Human RNA 2OMe sites, five-fold cross-validation ACC Version: journal full text in PMC | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Introduction GloVe + Transformer + MLP as evaluated in the cited study. Paper-specific predictor; checkpoint not specified Individual claims | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 2: Human RNA 2OMe sites, five-fold cross-validation ACC Version: journal full text in PMC | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Original source · journal full text in PMC
Technical metadata and extraction receipts
Stable ID: paper-model-5b57fab4696276b8a6
- areas
- rna-transcriptomes
- tasks
- human RNA 2-prime-O-methylation site prediction
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific predictor; checkpoint not specified
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: 2ome-lm-2025; source locator: Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 2: Human RNA 2OMe sites, five-fold cross-validation ACC; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.