Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
DeepFRI
DeepFRI as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column ACC (%); XML row4 column2At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column ACC (%); XML row4 column2Evaluations and results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 8 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DeepFRI: Enzyme-pair functional identity: original held-out test Configuration: DeepFRIProtocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction)Dataset: FUJISAN test sub-dataset LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Author-reported evaluation · Evaluation metadata: needs review | ||
| 83.16% REC (%) Unit: percent · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column REC (%); XML row4 column4 Source checking is not independent reproduction. |
| 80.88% ACC (%) Unit: percent · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column ACC (%); XML row4 column2 Source checking is not independent reproduction. |
| 0.6790 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column MCC; XML row4 column7 Source checking is not independent reproduction. |
| 0.8143 F1 Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column F1; XML row4 column6 Source checking is not independent reproduction. |
| 21.45% FPR (%) Unit: percent · Direction: lower | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column FPR (%); XML row4 column5 Source checking is not independent reproduction. |
| 0.8963 AUROC Unit: unitless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column AUROC; XML row4 column8 Source checking is not independent reproduction. |
| 79.77% PRE (%) Unit: percent · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column PRE (%); XML row4 column3 Source checking is not independent reproduction. |
| 0.9067 AUPR Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column AUPR; XML row4 column9 Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-ff5603bdd5cef9908aEvidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1, row DeepFRI, column ACC (%); XML row4 column2 Version: PMC11609699.1 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction DeepFRI as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1, row DeepFRI, column ACC (%); XML row4 column2 Version: PMC11609699.1 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- Enhanced prediction of protein functional identity through the integration of sequence and structural features · Original source · PMC11609699.1
Technical metadata and extraction receipts
Stable ID: paper-model-ff5603bdd5cef9908a
- areas
- proteins-complexes
- tasks
- Enzyme functional identity prediction
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-fujisan-2024; source locator: Table 1, row DeepFRI, column ACC (%); XML row4 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.