Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
model · method
scGPT
scGPT is the method recorded for Cell-type structure in frozen embeddings. This page preserves the configuration reported by GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT.
At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Recorded dataset | Aorta single-cell datasetGenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Table 2, Aorta / Cell type row, scGPT ARI column |
| Model type | Not extracted or verified for this record. |
| Known versions | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
| Weights licence | Not extracted or verified for this record. |
How it works
Recorded evaluation
The imported evaluation describes this procedure: k-means on pretrained cell embeddings; agreement with original cell-type labels.
GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Table 2, Aorta / Cell type row, scGPT ARI columnBenchmarks and results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scGPT: Cell-type structure in frozen embeddings Model: scGPT · Benchmark: Cell-type structure in frozen embeddings · Dataset: Aorta single-cell dataset k-means on pretrained cell embeddings; agreement with original cell-type labels. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.47 Adjusted Rand Index Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedGenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Table 2, Aorta / Cell type row, scGPT ARI column Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
- This is an evidence-limited profile. The recorded evaluation context does not establish performance on other datasets or configurations.GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Table 2, Aorta / Cell type row, scGPT ARI column
Profile review details
Reviewed the existing release record, its source pointer and linked evaluation context. This is not a fresh full-text architecture review or independent reproduction; numerical review status is unchanged.
Stable record: reported-model-399b1ce87a3f6dSources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT · Original source · PMC archival version PMC10614824.2
Technical metadata and extraction receipts
Stable ID: reported-model-399b1ce87a3f6d
- areas
- cells-tissues
- entity level
- method
- version
- Not reported
- reported name
- scGPT
- missing metadata
- version: not_reported_in_legacy_extract; checkpoint revision: not_reported_in_legacy_extract; training data: not_reported_in_legacy_extract; licence: not_reported_in_legacy_extract